Geothrix sp. PMB-07: Q9293_13265
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Entry
Q9293_13265 CDS
T09655
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gep
Geothrix sp. PMB-07
Pathway
gep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q9293_13265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gep03019
]
Q9293_13265
Enzymes [BR:
gep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q9293_13265
Messenger RNA biogenesis [BR:
gep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q9293_13265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Amidohydro_1
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WLT30684
LinkDB
All DBs
Position
3012372..3013670
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AA seq
432 aa
AA seq
DB search
MSFDSLGLMPELLRAVREQGYETPTPIQAQAIPLVLEKRDLLARAQTGTGKTAGFTLPLL
QLLAPHASTSASPARHPIRALILTPTRELAMQVEESVRTYGKYIPLRSATIFGGVNINPQ
TKALRAGVEILVATPGRLLDHHQQGNLNFSQLEILVLDEADRMLDMGFIRDIQKIIALLP
KSRQTLLFSATFTDEIKQLAAQFLKTPASVQITPQNTAAELVRQVVHPVDRERKRALLAH
IIHTRKLEQVLVFTRTKHGANRLSEQLDKDGISSMAIHGNKSQPQRIKALDDFKKGAVRV
LVATDIAARGLDIDMLPHVVNYELPQVPEDYIHRIGRTGRAGSEGEALSLVCVDEHKLLK
DIEKLLRKELPKDVVTGYAPDPSIPAEPIQTGRQGGGGGRGRGSARPARPSTGSAPRGER
GRHPARPSSRGK
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgtccttcgattccctcgggctgatgcccgagcttctgcgcgccgtacgcgagcagggc
tacgaaacccccacccccatccaggcccaggccatccccctggtgctggagaagcgcgat
ctgctggcccgggcccagacgggcaccggcaagaccgctggtttcaccctgcccctgctg
cagctgctggccccgcacgccagcacctcagcttcgcctgcgcgccacccgatccgcgcc
ctcatcctcacccccacccgcgagctggccatgcaggtggaggagagcgtccgcacctac
gggaaatacatccccctgcgctcggccaccatcttcggcggcgtgaacatcaatccccag
accaaggccctgcgcgccggcgtcgagatcctcgtggccacgcccggccgcctgttggat
catcaccagcagggcaacctgaacttcagccagctcgagatcctcgtgctggacgaagct
gaccgcatgctggacatgggcttcatccgcgacatccagaagatcatcgccctgctgccc
aagagccggcagaccctgctcttctcggccaccttcacggatgagatcaagcagctggcc
gcccagttcctgaagacgcccgcctcggtgcagatcacgccccagaacacggcggccgag
ctggtgcgccaggtcgtccatcccgtggaccgcgagcgcaagcgcgccctgctggcccac
atcatccacacccgcaagctggagcaggtgctggtgttcacccgcaccaagcacggcgcc
aaccggctgtccgagcagctcgacaaggatggcatcagctccatggccatccacggcaac
aagagccagccccagcgcatcaaggccctcgatgatttcaagaagggcgctgtccgcgtg
ctcgtggccaccgatatcgctgcccggggcctggacatcgacatgctcccccacgtggtg
aactacgagctgccccaggtgcccgaggattacatccaccgcatcggccgcactggccgc
gccggcagcgagggcgaagccctctccctggtctgcgtggacgagcacaagctactcaag
gacatcgagaagctgctccgcaaggaactgcccaaggacgtggtgactggctatgcaccc
gatcccagcatccccgccgagcccatccagaccgggcggcagggcggcggtggcggtcgt
ggccgggggtctgcccgtccggcgcggccttccacgggctccgctccccgcggcgaacgg
ggccggcacccggcccgccccagttcccggggcaagtga
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