Geothrix sp. PMB-07: Q9293_13805
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Entry
Q9293_13805 CDS
T09655
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
gep
Geothrix sp. PMB-07
Brite
KEGG Orthology (KO) [BR:
gep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gep03032
]
Q9293_13805 (topA)
03400 DNA repair and recombination proteins [BR:
gep03400
]
Q9293_13805 (topA)
Enzymes [BR:
gep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Q9293_13805 (topA)
DNA replication proteins [BR:
gep03032
]
Prokaryotic type
DNA Topoisomerases
Q9293_13805 (topA)
DNA repair and recombination proteins [BR:
gep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Q9293_13805 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_19
Motif
Other DBs
NCBI-ProteinID:
WLT30791
LinkDB
All DBs
Position
3130277..3132751
Genome browser
AA seq
824 aa
AA seq
DB search
MTKLVIVESPSKAKTITKYLGKGYKVMASVGHIRDLPRKLGVDIENGFQEEYEISPAKEK
VVKELKAAAKTADELILATDPDREGEAISWHLLEAIKPPKSLPVSRVLFNEITPAGIQKA
MAAPTTINKKLVDAQRARRVLDRLVGYKVSQVLWDKVRRGLSAGRVQSVAVRIIVDREKE
ILAFNPVEYWVLKGKFSAKLPPAFWMKLVKLGGQPLQLGNKETKRRVADAAQAADLKTKL
EKAAYKVTGLETKEKKRNPAAPFTTAKLQQESAQKLKMSVSRTMQNAQRLYEGVDFGEGP
VGLITYMRTDSPRMAPEAVEATRAFIADKYGKDYLPAKARIYTGKSGAQDAHEAIRPTDI
TRTPESLRGNLEPDQFRLYALIWRRTMASQMEAARFDETVVQTEAEVGKDTATFEAKGEI
ERFPGWLAVYRADKTEVDAEGIADATKGPEEEDEDDALLPALKLGEALKLDQLDTDQQFT
KPPARFNEATLVKELEEDGIGRPSTYASIISTIQDRDYVKKHEGRFKPTDLGITVTDLLL
QGFVDLMDPKYTGAMEGNLDRIEEGKLTFKKAMTDFYGPFEQSLAAAGKDMQNLKAGVPT
GEKCPKCGDRKKHPGTLLKRIGRNGLFVGCTNYSAEAEKDKCDYTADLEKMEEPEDAPEC
PLCGTTPMNLRKGQWGPFWACPNYPKCKGIVKADPKGIPVPPDEPTGETCPNCGKGFVKR
HGRYGEFVCCVDYPTCKTVKKEILAVPCPKCGGGLSPRKTRFGKVFYGCTNYPKCDYTAW
DKPVPVTCPACKNPTMGEKTKKPRGKDPIQVLVCPNCKHEEPMG
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaagctcgtgatcgtcgaaagcccatcgaaggcgaagaccatcaccaagtacctc
ggcaaggggtacaaggtcatggcatccgtgggacacatccgggatctgccgcgcaagctg
ggcgtcgacatcgagaatgggttccaagaggaatacgagatcagccccgccaaggagaag
gtggtcaaggagctgaaagccgccgcgaaaaccgccgacgaactgattctcgcaaccgac
cctgatcgcgagggggaggccatcagctggcacctgctggaggccatcaagccgcccaag
agcctgcccgtaagccgcgtgctcttcaacgagatcacccccgccggcatccagaaggcc
atggccgcgcccaccaccattaataagaagctggtggatgcccagcgggcccgccgcgtg
ctggatcgcctcgtgggctacaaggtcagccaggtgctctgggacaaggtgcgccgcggc
ctcagcgcgggccgcgtgcagagcgtggccgtgcgcatcatcgtcgaccgcgagaaggag
atcctggccttcaaccccgtcgaatactgggtgctgaagggcaagttcagcgccaagctg
ccgcccgctttctggatgaagctggtgaagctggggggccagcccctgcagctgggcaac
aaggagaccaagcgccgcgtggccgatgccgcccaggccgccgatctgaaaaccaagctg
gagaaggccgcctacaaggtgaccggcctggaaaccaaggagaagaagcgcaaccccgcc
gcgcccttcaccaccgccaagctgcagcaggaatcggcccagaagctgaagatgagcgtg
agccgcaccatgcagaacgcccagcggctctatgaaggtgtcgacttcggcgaaggcccc
gtgggcctcatcacctacatgagaaccgactcgccccgcatggcccccgaggccgtggag
gccacccgcgccttcatcgccgacaagtacggcaaggactacctgcccgccaaggcccgc
atctacaccggcaagtccggcgcgcaggatgcgcacgaggccatccgccccacggacatc
acccgcacgcccgaatcgctgcgcggcaacctggagcccgatcagttccgcctctacgcc
ctcatctggcggcgcaccatggcctcgcagatggaggccgcgcgcttcgatgagacggtg
gtccagaccgaggccgaagtcggcaaggacacggccaccttcgaggccaagggcgagatc
gagcgtttccccggctggctggcggtctaccgcgccgacaagaccgaagtcgatgccgaa
ggcatcgccgacgccaccaagggccccgaggaagaagacgaagatgatgcgttgctgccc
gccctgaagctgggcgaggccctcaagctcgaccagctcgacaccgaccagcagttcacc
aagccgcccgcccgcttcaacgaagccacgctggtgaaagagctggaagaggatggcatc
ggccgcccctccacctacgccagcatcatcagcaccatccaggaccgcgactacgtcaag
aagcacgaaggccgcttcaagcccaccgacctgggcatcaccgtcaccgatctgctgctg
cagggcttcgtggatctcatggaccccaagtacaccggcgccatggagggcaacctcgac
cgcatcgaagagggcaagctcaccttcaagaaggccatgacggacttctacggccccttc
gagcagagcctggccgccgccggcaaggacatgcagaacctcaaggccggcgtgcccacg
ggggagaagtgccccaagtgcggcgaccggaagaagcacccgggcaccctgctcaagcgc
atcggccgcaatggcctcttcgtgggctgcaccaactacagcgccgaagccgaaaaggac
aagtgcgattacacggcggatctggaaaagatggaggagcccgaagacgcgcccgagtgc
ccgctctgcggcaccacgcccatgaacctgcgcaagggccagtggggccccttctgggcc
tgccccaactaccccaagtgcaagggcatcgtgaaggccgatcccaagggcatccccgtg
cccccggacgagcccaccggcgagacctgccccaactgcggcaagggcttcgtgaagcgg
cacggccgctacggcgagttcgtctgctgcgtggactaccccacctgcaagaccgtgaag
aaggaaatcctggccgtgccctgccccaagtgcggcggcggcctcagcccccgcaagacg
cgcttcggcaaggtcttctacggctgcaccaactaccccaagtgcgactacaccgcctgg
gacaagcccgtgcccgtcacctgccccgcgtgcaagaaccccaccatgggcgaaaagacc
aagaagccccgcggcaaggaccccatccaggtgctcgtctgccccaactgcaagcatgaa
gagccgatgggataa
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