Geothrix sp. PMB-07: Q9293_16470
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Entry
Q9293_16470 CDS
T09655
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gep
Geothrix sp. PMB-07
Pathway
gep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q9293_16470 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gep03019
]
Q9293_16470 (pnp)
03016 Transfer RNA biogenesis [BR:
gep03016
]
Q9293_16470 (pnp)
Enzymes [BR:
gep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Q9293_16470 (pnp)
Messenger RNA biogenesis [BR:
gep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Q9293_16470 (pnp)
Transfer RNA biogenesis [BR:
gep03016
]
Prokaryotic type
tRNA degradation factors
Q9293_16470 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
KH-I_KHDC4-BBP
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
WLT31313
LinkDB
All DBs
Position
3785437..3787617
Genome browser
AA seq
726 aa
AA seq
DB search
MNALKFNPTTVSVDLGGTPISIETGRIAKQAHGAVVVRQGDTMVLVAVCYGTPREGIDFF
PLTVDYREPVLAAGKIPGGWFKREGKPTTKETLTSRLIDRPLRPLFEEGYNGDTMITAQV
LSYDGQHAPETLAMVGASAALIISEIPFVNPVGGVRVGRVNGQLIVNPTVDQRADSDIDL
LVAGTADALVMVECGAKEVLEADMVKALAFGHEQIKTLVKLQKDLQAKVGKPKVAAVKAE
RNEALYQEVAAAFAEKLFAALTMKVKIESYKTIDLLKKEAVAQFCTDKPELKKDLVACFD
ELKETLFRNAILKQGVRLDGRRFDQIRPLNIEVGVLPAAHGSCLFTRGETQALVTATLGT
IQNTQIIDGLEEEYKKKFYLHYNFPGYSVGECKPNRGPGRREIGHGMLAERSLFAVFPTP
EENPYTVRVVSDITESNGSSSMATICGGTLALMDAGIKLKSPVAGVAMGLVSDGDKFVVL
SDIAGQEDHYGDMDFKVAGTEKGITALQMDIKIGGITTEILTKALDQAKAGRLHLLDLMG
QVLAAPRSEFASNAPQMHSIQLPKEKIRDVIGKGGATIRNIIEVSGCEVNIDDDGLCQVA
GPTQEKLQVALKMIGDLIQSAEVGKTYLGKVAKVVEFGAFVTILPGLDGLLHVSEIAHHR
VANPSDELNEGQEVMVKCIGIDEKSGKIKLSRKALIPKPEGADAELEGEANGEEPRREQR
PRPRRN
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcattgaaattcaatcccaccaccgtttcggtggatctgggcggcacgcccatt
tccatcgagaccggccgcatcgccaagcaggcccacggcgccgtcgtggttcgccaaggc
gacaccatggtcctcgtggccgtgtgctacggcaccccccgcgaaggcatcgacttcttc
cccctcaccgtggactaccgcgagcccgtgctggccgctggcaagatccccggtggctgg
ttcaagcgcgagggcaagcccaccaccaaggaaaccctcaccagccgcctgattgaccgc
cccctgcgccccctcttcgaggaaggctacaacggcgacaccatgatcaccgcccaggtg
ctcagctacgacggccagcatgcccccgagacgctcgccatggtgggcgcctcagcagcc
ctcatcatcagcgagatccccttcgtgaaccccgtgggcggtgttcgcgtgggccgcgtc
aacggccagctcatcgtgaatcccacagtggatcagcgcgccgacagcgacatcgacctg
ctggtggctggcactgccgacgccctcgttatggtggagtgcggcgccaaggaagtgctg
gaagccgacatggtgaaggccctggccttcggccatgagcagatcaagaccctggtgaag
ctccagaaggacctgcaggccaaggtcggcaagcccaaggtcgccgccgtcaaggccgag
cgcaacgaggccctctaccaggaagtggccgccgccttcgccgagaagctcttcgcggca
ctgaccatgaaggtgaagatcgagagctacaagaccatcgacctcctcaagaaggaggcc
gtagcccagttctgcactgacaagcccgagctgaagaaggatctcgtcgcctgcttcgac
gagctgaaggagacgctcttccgcaacgccatcctcaagcagggtgtgcgcctggacggc
cgcaggttcgaccagatccgccccctcaacatcgaggtcggcgtcctgcccgcggcccac
ggcagctgcctcttcacccgcggtgagacccaggccctggtgaccgccacgctgggcacc
atccagaacacccagatcatcgacggcctggaagaagagtacaagaagaagttctacctg
cactacaacttccccggctactccgtgggcgagtgcaagcccaaccgcgggcccggccgc
cgcgagatcggccacggcatgctggccgagcgctcactcttcgccgtcttccccaccccc
gaggaaaacccctacaccgtgcgtgtggtctccgacatcaccgagagcaacggctcctcg
tccatggccaccatctgcggcggcaccctcgccctgatggatgccggcatcaagctcaag
tccccggtggcgggcgtggccatgggcctcgtcagcgacggtgacaagttcgtggtcctg
tccgacatcgccggccaggaagaccactacggcgacatggacttcaaggtcgccggcact
gagaagggcatcaccgccctccagatggacatcaagatcggcggcatcaccaccgagatc
ctcaccaaggccctcgatcaggccaaggccggccgcctgcacttgttggacctcatgggc
caggtgctcgccgccccccgcagtgagttcgccagcaacgccccccagatgcacagcatt
cagctccccaaggagaagatccgcgacgtcatcggcaagggcggcgccaccatccgcaac
atcatcgaggtgagcggctgcgaagtgaacatcgacgacgacggcctctgtcaggtcgcc
ggccccacccaggaaaagctgcaggtggccctcaaaatgatcggcgacctcatccagagc
gccgaggttggcaaaacctacctgggcaaggtggccaaggtggttgagttcggcgccttc
gtgaccatcctccccggcctcgatggcctgctccacgtcagcgagatcgcccaccaccgc
gtggccaacccctccgacgaactgaacgagggccaggaagtcatggtcaagtgcatcggc
atcgacgaaaagagcggcaagatcaagctcagccggaaggctctgatcccaaagcctgag
ggggcggatgctgagcttgagggtgaagcgaatggcgaggaaccgcgtcgtgaacagaga
cccaggcctcggcgcaattaa
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