Geothrix sp. PMB-07: Q9293_18595
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Entry
Q9293_18595 CDS
T09655
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
gep
Geothrix sp. PMB-07
Brite
KEGG Orthology (KO) [BR:
gep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gep03032
]
Q9293_18595 (gyrB)
03400 DNA repair and recombination proteins [BR:
gep03400
]
Q9293_18595 (gyrB)
Enzymes [BR:
gep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Q9293_18595 (gyrB)
DNA replication proteins [BR:
gep03032
]
Prokaryotic type
DNA Topoisomerases
Q9293_18595 (gyrB)
DNA repair and recombination proteins [BR:
gep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Q9293_18595 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
WLT31717
LinkDB
All DBs
Position
4238670..4241219
Genome browser
AA seq
849 aa
AA seq
DB search
MSEEVLSARVHTPLETDSYTADNITVLRDLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDN
SVDEALAGFCKRVDVILHGDGSCTVEDDGRGIPVDIHKEEGRSAAEVIMTVLHAGGKFDN
TSTEGKNAYKVSGGLHGVGVSCVNALSSKLWLTVWKDGQEYAMSFSQGKADAPLRKVGPT
ARRGTRVKFQPDPEVFNNVLEFSFETLSQRLRELSYLNQGVHIRITDERTGDTHDFVNAG
GIASFVEHLNRNKVVLHKPPIYIKDEKQDTTVEVALQWNDSYQETLYCFTNNIRNRDGGA
HLEGFRAAMTRVINSYAEKNNLLKSAKVSLSGEDVREGLTAVVSAKVPDPKFSSQTKDRL
VSSEVKGIVQTIVYEKLSAFFEENPREAKAILEKAIEAARAREAARKARELTRRKGALDG
GGLPGKLADCQEKDPALSEIFLVEGDSAGGSAKQGRHRATQAILPLKGKVLNVEKARFDK
ILSHNELRVLIQALGTGIGKEEFKVENLRYHKIVLMTDADVDGSHIRTLLLTFFYRQMPE
LVERGHLYIAQPPLYKVKKGKTEKYLKDERALEEFLFNKALDGWSLTLPDGSEHKGAVLV
REMKKWGEVQQLYGKLHRRGYARPLVDALLAEGLLDADRFTTRESLEQLGAAIVKQNLGT
CEVETTDAIELAAEGEEPATTIPANHRLRVVRMHLSRPITLWIDTQVAHWGEFRRLAALK
VELAAFHGGELRLRRLKDIKETAKDEEPEEGPTKLNKEMTFSDPEAMLAMVMDEGKRGLG
IQRYKGLGEMNPEQLWETTMDPERRTLLQVRVDDAVEADEIFTILMGDAVEPRRRFIETN
ALLAENIDI
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagaagtccttagcgcacgcgtgcacacccccctggaaaccgacagctacacc
gccgacaacatcacggttctgcgagatctggaggccgtccgcaagcggcccggcatgtac
atcggcgacaccgatgacggcagcggtctgcaccacatggtttatgaggtggtagacaac
tccgtggacgaagctctggcgggcttctgcaagcgcgtggacgtgatcctgcacggcgac
ggcagctgcaccgtggaagacgatggccgtggcattccggtggatatccacaaagaagaa
gggcgcagcgccgccgaagtgatcatgacggtgctccatgcgggcgggaagttcgacaac
accagcaccgagggcaagaacgcctacaaggtgtccggcggcctccacggcgtgggtgtg
tcctgtgtgaacgccctctcttccaagctctggctcaccgtctggaaggacggccaggaa
tacgccatgagcttctcccaaggcaaggccgacgcccctctgcggaaagtgggtcccacc
gcccggcgcggcacccgcgtgaagttccagcctgatccagaggtcttcaataacgtgctg
gagttcagcttcgagacgctgagccagcgcctgcgtgagctgagctacctcaaccagggc
gtccacatccgcatcacggacgagcgcacgggcgacacccacgactttgtgaacgccggc
ggcatcgcctctttcgtggaacacctgaaccgcaacaaggtggtgctccacaaacccccg
atctacatcaaagacgagaagcaggacaccacggtggaggtcgccctccagtggaacgac
tcctaccaggagaccctctactgcttcaccaacaacatccgcaaccgggacggcggcgcg
cacctggagggcttccgggccgccatgacgcgcgtgatcaacagctatgcggaaaagaac
aacctgctcaaaagcgccaaggtgagcctctcgggtgaggatgtccgcgagggcctgact
gccgttgtcagcgccaaggttcctgatcccaagttttccagtcagaccaaggaccgcctg
gtttcgagcgaggtgaagggcatcgtccagaccatcgtgtacgagaagctctccgccttc
ttcgaggagaaccccagggaggccaaagccatcctggagaaggccatcgaggccgcccgc
gcccgtgaggccgcccgcaaggctcgtgagctcacccgccgcaagggcgccctcgatggt
ggcggcctgcccggcaagctggccgactgccaagagaaggaccccgcgctcagcgagatc
ttcctggtggagggtgactccgccggtggcagcgccaagcagggccgtcaccgggccacc
caggccatcctgcccctcaagggcaaggtgctgaacgtggagaaggcccgcttcgacaag
atcctcagccacaacgagctccgggtgctgatccaggccctgggcaccggcatcggcaag
gaagagttcaaggtcgagaacctccggtaccacaagatcgtgctgatgaccgacgccgac
gtggacggctcccacatccgcaccctgctgctcaccttcttctaccggcagatgccggag
ctggtggagcgcgggcacctctacatcgcccagccgccgctctacaaggtgaagaagggc
aagaccgagaagtacctcaaggacgagcgggcgctggaagagttcctcttcaacaaggcc
ctggatggctggagcctgaccctgcccgacggcagcgagcacaagggcgccgtcctggtg
cgcgagatgaagaagtggggcgaggttcagcagctctacgggaagcttcaccgccgtggc
tatgcccgccccctggtggacgccctgctggccgagggcctgctggatgcagaccgcttc
accacccgggagagcctggaacagctgggtgccgccatcgtgaagcagaatctgggcacc
tgcgaggtcgagaccacggacgccatcgagctggccgcggagggcgaggagcccgccacg
accatcccggccaaccaccgcctgcgggtggtgcgcatgcatctcagccgccccatcacc
ctctggatcgacacccaggtggcccactggggcgagttccgccgcttggcggccctcaag
gtcgagctggccgcgttccacgggggcgagctgcggctccgccgcctcaaagacatcaag
gagaccgccaaggacgaggagcccgaggagggccccaccaagctcaacaaggagatgacc
ttctctgatccggaagccatgctggccatggtcatggacgagggcaagcggggcctgggc
atccagcgctacaagggtctgggtgagatgaaccccgagcagctctgggagaccaccatg
gatcccgagcgccgcaccctgctgcaggtccgggtggatgacgccgtggaagccgacgag
atcttcaccatcctcatgggcgatgccgtggaaccccgccgccgcttcatcgagaccaat
gcgctcctggccgagaacatcgacatctaa
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