Geomonas oryzisoli: KP004_00220
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Entry
KP004_00220 CDS
T07282
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ger
Geomonas oryzisoli
Pathway
ger03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ger00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KP004_00220 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ger03021
]
KP004_00220 (rho)
03019 Messenger RNA biogenesis [BR:
ger03019
]
KP004_00220 (rho)
Transcription machinery [BR:
ger03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KP004_00220 (rho)
Messenger RNA biogenesis [BR:
ger03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KP004_00220 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
NACHT
AAA_25
AAA
ATPase_2
S1CSD-TOTE-2
Fungal_virus_P2_C
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
QWV93652
UniProt:
A0ABX8J985
LinkDB
All DBs
Position
56183..57430
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AA seq
415 aa
AA seq
DB search
MNLQELKEKKINDLTAIAKALNIEGASSLRKQDLIFAILNAQTEKNGMIFGEGVLETLPD
GFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLHTGDTVAGQIRPPKEGERYFALLKVETVN
HESPEVARDKILFDNLTPLYPEEKLVLETTPDNMSSRVMELVAPIGKGQRGLIVAPPRTG
KTMLIQNIANSIALNHPEVFLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPASRHIQVA
EMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPPSGKILSGGVDSNALHKPKRFFGA
ARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHLDRKLVEKRTFPAIDINKS
GTRKEELLIPQASLNRIWILRKVLHPMNVVDSMEFLISKLQGTKSNQDFLDSMSK
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaacctacaggaacttaaagaaaagaaaatcaacgatctcacggccattgccaaggcg
ttgaacatcgagggtgcgtccagtctcaggaagcaggacctgatcttcgccatcctcaac
gcccagaccgagaagaacggcatgatcttcggcgagggggtcctcgagaccctgcctgac
gggttcggcttcctgagggcgccggattacaactacctgccgggtccggacgacatctac
gtgtcgccgtcccagatccgccgcttcaacctgcacaccggcgacaccgttgccggccag
atcaggccgcccaaggaaggggagcgctacttcgccctcctcaaggtcgagaccgtcaac
cacgagtctcccgaggtcgcccgcgacaagatcctcttcgacaacctgaccccgctctac
ccggaagagaagctggtcctcgagaccacgccggacaacatgtccagccgcgtcatggaa
ctggtcgcgccgatcggtaaagggcagaggggcctcatcgtcgctccgccgcgcaccggc
aagaccatgctgatccagaacatcgccaactccatcgcgctgaaccaccccgaggtgttc
ctgatcgtccttctcatcgacgagcgcccggaagaggttaccgacatgcagcgctccgtg
aagggcgaggtcatttcctccaccttcgacgagccggcttcccgtcacatccaggtggcc
gagatggtcatcgagaaggccaagcgcctggtcgagcacaagcgcgacgtcgtcatcctg
ctcgactccatcacccgtctggcccgcgcctacaacaccgtgatcccgccgtcgggcaag
atcctctccggtggtgtcgactccaacgccctgcacaagcccaagcgcttcttcggcgcc
gcgcgtaacatcgaggagggtggctcgctcaccatcatcgccaccgccctggtcgatacc
ggctccaagatggacgaggtcatctttgaagagttcaagggcaccggcaacatggagctc
cacctcgatcgcaagctggtcgagaagaggaccttccccgccatcgacatcaacaagtcc
ggcaccaggaaggaagaactgctcatcccgcaggcctctttgaaccgcatctggatcctc
cggaaggtgctccacccgatgaacgtggtggactccatggagttcctgatctccaagctg
caggggaccaagagcaaccaggacttcctcgattccatgagcaagtaa
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