Geomonas oryzisoli: KP004_00330
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Entry
KP004_00330 CDS
T07282
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ger
Geomonas oryzisoli
Pathway
ger03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ger00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KP004_00330 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ger03019
]
KP004_00330 (recQ)
03400 DNA repair and recombination proteins [BR:
ger03400
]
KP004_00330 (recQ)
Enzymes [BR:
ger01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KP004_00330 (recQ)
Messenger RNA biogenesis [BR:
ger03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KP004_00330 (recQ)
DNA repair and recombination proteins [BR:
ger03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KP004_00330 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
QWV93672
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All DBs
Position
77291..79081
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AA seq
596 aa
AA seq
DB search
MSLSHIQILNEVFGFKSFRPRQQEIVETVLSGKDAFVLMPTGGGKSLCYQVPALCLPGTA
LIVSPLISLMKDQVDALRENGVAAACYNSALGEAEARRVLAEFHAGELKLLYVAPERLLS
DGFIDRIKALPISLFAVDEAHCVSQWGHDFRPEYAQLGMLREIFPQIPMIALTATADAQT
RGDILSRLGLQDATCFCTGFDRPNIRYSVVEKNKPFSQLTAFLSTRKDEAGIVYALSRKR
VEEVARKLCEAGVKAAAYHAGLPDKERHEVQEAFLRDDVKVVVATVAFGMGIDKSNVRFV
VHYDMPKSIESYYQETGRAGRDGLPADALLLFGYGDIAVARGLIGNGGNEEQNRIELHKL
NCMVGFAEAQTCRRQVLLGYFGDSLAAGCGNCDICESPPERFDGTEDARKALSCVYRVGQ
RFGMGHVIDVLRGSQNQRIHELKHDQLSTFGIGKHHSQEVWGNLLRQLIHLGYLEQDLAN
FSVLKLTEKARPLLRGDMALELAKPRDTRVVEKKTAARKPNYDGELFGELRELRKQIADE
QQVPPYVVFPDATLAEMAAHMPKDKWELLKITGVGQHKLARYGDAFLRVIKAHQNH
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctttcccacatccagatcctgaacgaggtgttcggcttcaaatccttccggccg
cgccagcaggagatcgtggagacggtgctctccggtaaggatgccttcgtgctgatgccg
accggtggcggcaaatccctctgctaccaggtccccgccctttgccttccgggcaccgcc
ctcatcgtctctccgctgatctcgttgatgaaggatcaggtagatgcgctgcgcgagaac
ggcgtcgccgctgcctgctacaactccgctctcggcgaggccgaggcacgtcgggtgctg
gccgagtttcacgccggggagttgaagctcctctacgtggcaccggagcggctgctctca
gacggtttcatcgaccgcatcaaggccctccccatttccctctttgccgtcgatgaggcc
cactgcgtctcgcaatgggggcacgacttccgtcccgagtacgcacaacttggcatgctg
cgcgagatcttcccgcagatcccgatgatcgcgctcaccgcgacggccgacgcacagacc
cgcggcgacatcctctcccggctcgggctccaggacgccacctgcttctgcaccggtttc
gaccgccccaacatccgctacagcgtcgtggaaaagaacaagccgttcagccagctgacg
gcctttttatcgacccggaaggacgaggcggggatcgtctatgccctgtcccgcaaacgg
gtcgaggaggtggcaaggaagctgtgcgaggcgggcgtgaaggcggccgcctatcacgcg
gggctgcccgacaaggagcgccacgaggtccaggaggcgtttctgagggatgacgtgaag
gtcgtggttgcgacggtcgccttcgggatggggatcgacaagtccaacgtccgcttcgtc
gttcactacgacatgcccaagagcatcgagagctactaccaggaaaccggccgcgccggc
cgcgacgggcttcccgccgacgcgctgttgctgtttggttacggagacatcgcggtggcc
cgggggctgatcggcaacggcggcaacgaggagcagaaccggatcgagctgcacaagttg
aactgcatggtgggctttgccgaggcgcagacctgccggcgccaggtgctcttgggatac
ttcggtgacagcctggccgccgggtgcggcaactgcgacatctgcgagagcccgcccgag
cgtttcgacgggacagaggatgcccgtaaggcgctctcctgcgtctaccgggtcggtcag
cgtttcggcatggggcacgtcatcgacgtgttgcggggatcgcaaaaccagaggatccac
gagctgaagcacgaccagctctccacctttggcatcggcaagcaccattcccaggaggtg
tggggcaacctcctacgtcagttgatacacctgggttacctggagcaggacctggccaat
ttttcggtgctgaagctgacggaaaaggcgcggccgctgttgcggggggatatggcgctg
gagttggccaagccgagggataccagggtggtcgagaagaagaccgcagccaggaagccc
aattatgacggcgagctcttcggcgaactgcgggagctgcgcaagcagattgccgatgag
cagcaggtgccgccgtacgtcgtcttccccgacgcgacactcgccgagatggcggcgcac
atgcccaaggacaagtgggagctgttgaagatcaccggcgtcggccagcacaaactcgcc
cgttacggcgacgccttccttcgggtgataaaggcacaccaaaaccattag
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