Geomonas oryzisoli: KP004_03800
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Entry
KP004_03800 CDS
T07282
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
ger
Geomonas oryzisoli
Pathway
ger00521
Streptomycin biosynthesis
ger00523
Polyketide sugar unit biosynthesis
ger00525
Acarbose and validamycin biosynthesis
ger00541
Biosynthesis of various nucleotide sugars
ger01055
Biosynthesis of vancomycin group antibiotics
ger01100
Metabolic pathways
ger01110
Biosynthesis of secondary metabolites
ger01250
Biosynthesis of nucleotide sugars
Module
ger_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
ger00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
KP004_03800 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
KP004_03800 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
KP004_03800 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
KP004_03800 (rfbB)
00525 Acarbose and validamycin biosynthesis
KP004_03800 (rfbB)
Enzymes [BR:
ger01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
KP004_03800 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
3Beta_HSD
Polysacc_synt_2
RmlD_sub_bind
NAD_binding_4
Motif
Other DBs
NCBI-ProteinID:
QWV94320
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All DBs
Position
862117..863187
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AA seq
356 aa
AA seq
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MQDTFTPTSLLVTGGAGFIGSNFINHFMAGNPQCRVINLDLLTYAGNLKNLTAVEGNPNY
RFVKGDICDGELVARLLAEEKVDAVAHFAAESHVDRSITGPEIFVKTNVLGTQTLLEASR
LHAEKLPDFRFLQVSTDEVYGSLGPEGYFTEETPLAPNSPYSASKAGADLLVRAYFETFG
LPTLNTRCSNNYGPYHFPEKLIPLMIHNILKKRSLPVYGDGLNVRDWLHVKDHSAAIERV
LKQGRPGEIFNVGGNNEWKNIDIVKLVCDLMDERLGRAPGESRELITFVKDRKGHDRRYA
IDASKLKRELSWEPSYTFERGIAETIDWYLANQGWVEEVVSGAYREYYEMQYGATA
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatacgttcacccccacctctttactggttaccggaggggcgggattcatcggt
tccaacttcatcaaccacttcatggcggggaacccgcagtgccgggtgatcaacctggac
ctgctgacctacgccgggaatctgaagaacctgaccgcggtggagggaaaccccaactac
cgcttcgtgaagggtgacatctgcgacggcgagctggtcgcgcgtctgcttgccgaggaa
aaggtcgatgccgtggcccatttcgccgccgaatcgcacgtcgaccgctccatcaccggc
cccgaaattttcgtgaaaacgaacgtgctggggacccagaccctcctggaggcgagccgc
ctgcacgccgagaagcttcccgatttccgcttcctgcaggtttccaccgacgaggtgtac
ggcagcctcggcccggaggggtatttcaccgaggagacgccgctggcgcccaactccccg
tattccgcgagcaaggccggtgccgacctcctggtgcgtgcctacttcgagaccttcggc
ctgccgaccttgaatacccgctgctccaacaactacggtccctatcacttccccgagaag
ctgattccgctcatgatccacaacatcctgaagaaacgctcgctgccggtgtatggcgac
gggctgaacgtgcgcgactggctgcacgtgaaggaccattcagccgccatcgagcgggtg
ctgaaacaggggaggccgggcgagatcttcaacgtgggcggcaacaacgagtggaagaac
atcgacatcgtgaagctggtctgcgacctgatggacgagcgcctggggcgcgcgccgggg
gagagccgtgaattgatcaccttcgtcaaggaccgcaaggggcacgaccggcgctatgcc
atcgacgcctccaagctgaagcgcgagttgtcctgggagccgagttacaccttcgagcgc
ggcatcgccgagaccatcgactggtacctggccaaccagggatgggtcgaggaagtggtg
agcggcgcctaccgggaatactacgagatgcagtacggagcgacggcttaa
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