Geomonas oryzisoli: KP004_03930
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Entry
KP004_03930 CDS
T07282
Symbol
ruvB
Name
(GenBank) Holliday junction branch migration DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
ger
Geomonas oryzisoli
Pathway
ger03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ger00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KP004_03930 (ruvB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ger03400
]
KP004_03930 (ruvB)
Enzymes [BR:
ger01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KP004_03930 (ruvB)
DNA repair and recombination proteins [BR:
ger03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KP004_03930 (ruvB)
RecFOR pathway proteins
KP004_03930 (ruvB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
Mg_chelatase
TIP49
AAA_16
nSTAND3
AAA_22
AAA_14
AAA_24
IstB_IS21
AAA_3
RNA_helicase
NTPase_1
AAA_17
TsaE
NB-ARC
AAA_2
AAA_18
AAA_25
GGDEF_2
NACHT
AAA_28
ABC_tran
Rad17
Motif
Other DBs
NCBI-ProteinID:
QWV94344
LinkDB
All DBs
Position
complement(889752..890765)
Genome browser
AA seq
337 aa
AA seq
DB search
MTRFISAERSEDDLLEASLRPRALADYVGQEKAKGNLGLFIDAARGRGEALDHVLLYGPP
GLGKTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEE
ILYPAMEDFQLDIIIGQGPSARTIKLDLPKFTLVGATTRAGLLSSPLRDRFGVISRLEFY
THDELAFIITRSARIFGMDIAADGALELARRSRGTPRIANRLLRRVRDFAQVRADGVITR
EVADQALALLEIDDMGFDTMDRAILLTIIDKFGGGPVGLDTIAAAISEESDTIEDVYEPF
LIQNGFLNRTPRGRVATAAAYSHFGRIAPDPPQGRLF
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgacccgctttatcagcgccgagagatccgaagacgacctccttgaagcatcgctgcgc
ccccgcgcgttggcggactatgtgggacaggaaaaggccaaggggaacctcgggctcttc
atcgacgccgcgcgcggcaggggcgaggcgctggaccacgtactgctctacggccccccg
ggcctggggaagaccaccctggccaacatcatcgcctgcgagatgggggtgaacatcaag
tccacctccggcccggtgatcgagcggccgggcgacctggccgccatcctcaccaacctc
gagccgcacgacgtcctcttcatcgacgagatccaccgtctctcccacgtggtggaggag
atcctctaccccgccatggaggacttccagctcgacatcatcatcggccaggggccgagc
gcgcgcaccatcaagctcgacctccccaagttcaccctggtcggcgccaccacccgtgcc
gggctcctgtcgtccccgctcagggaccgcttcggggtgatctcgcggctcgaattctac
acccacgacgagctcgccttcatcatcacccgttccgcgcgcatcttcgggatggacatc
gcggccgacggtgccctggaactggcgcgcagaagccgcggcacgccgaggatcgccaac
cgcctgctgcgccgcgtgcgcgacttcgcccaggtgcgcgccgacggcgtcatcacccgc
gaggtggcggaccaggcgctggcgctcttggagatcgacgacatgggcttcgacaccatg
gaccgcgccatcctgttgaccatcatcgacaagttcgggggtggcccggtggggctggac
accattgcggcagccatcagcgaagagagcgacaccatcgaggacgtctacgagcccttc
ctgatccagaacggtttcctgaaccgcaccccgaggggacgcgtggccaccgccgcagcc
tacagccatttcggccggatcgcgcctgatccgccgcagggaaggttgttctag
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