Geomonas oryzisoli: KP004_05120
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Entry
KP004_05120 CDS
T07282
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ger
Geomonas oryzisoli
Pathway
ger03030
DNA replication
ger03430
Mismatch repair
ger03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ger00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KP004_05120 (dnaE)
03430 Mismatch repair
KP004_05120 (dnaE)
03440 Homologous recombination
KP004_05120 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ger03032
]
KP004_05120 (dnaE)
03400 DNA repair and recombination proteins [BR:
ger03400
]
KP004_05120 (dnaE)
Enzymes [BR:
ger01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KP004_05120 (dnaE)
DNA replication proteins [BR:
ger03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KP004_05120 (dnaE)
DNA repair and recombination proteins [BR:
ger03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KP004_05120 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
PHP_C
Motif
Other DBs
NCBI-ProteinID:
QWV94570
UniProt:
A0ABX8J809
LinkDB
All DBs
Position
1151186..1154662
Genome browser
AA seq
1158 aa
AA seq
DB search
MDSPANFVHLHLHSQYSLLDGAIRIGDLVKKAKEYHMPAVAVTDHGNMFGSLEFFLKAQD
KGVKPILGCEVYIAPGSRLDKKAPTAADPVTSYHLILLAENMTGFKNLCYLSSAGYKDGF
YRRPRIDKELLEKHREGLICLSACLQGEIAYLAGRNKMEEAKAAAIWYADMFPGSYYLEI
QENGIPEQTIANRRVMEIARELNLPLVATNDCHYLNKEDAKAHEILLCIQTGKTMSDPSR
MRFTTEAFYVKSPEEMARDFHYCPEALENTVKIAERCHYEFDFKTYHFPAYEAPPGETLD
DQLERESIQGLKLRLEKIKIKYPDLTPEQEQAYHDRLRIELDCIRHMGFPGYFLIVADFI
NWAKDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERISMPDIDVDFCQ
DRREEVIQYMVERYGREKVCQIAAFGTMAARGVIRDVGRALDLTFADVDKIAKLVPEVLG
ITLDKAIEQEPKLKELMAADAKVNEVMTVALRLEGLARHISTHAAGLVVAPRQMEDFCPV
YKDQKTGSLTTQYSMKYVEKVGLVKFDFLGLKNLTVIDNACKHIRNGKDPNFDITLLTDD
DPETYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGSGMVDDFI
ERKHGRKQTVYDLPQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLLRRAMGKKDA
EQMAKERLKFMEGSEKLGLDSKKCAAIFDLMAKFAEYGFNKSHSAAYALVAYQTAYLKAH
YPVEFMAALLTEDMSNTDKVIKSIGDCREMGIEVLPPDINESLRSFRVLDTAMRFGLGAV
KNVGEGAIEAILEARGDEPFKDIFDFCERVDLRRCNKRVIEALIKSGAFDCTKAKRAQLM
AVLEDAAAQGQRVQQERESAQVSLFGMAEIQRGSNGGGNRLPDIPEWDEKYRLGCEKEAI
GFFITGHPLDRYVADMRRFSNVDCSSINEAKDKSEVKICGVPASLKEIMTKKGDRMGFVT
LEDLVGSLEVVVFSDVYARCSEFLKGDDPVHITGTVEHGEKGAKIMASDIVLLRDLVERE
TRRVNFTIDAKEADPGKLKTLKDIISRYQGICRSFLHLDIENSSRVTIRLSDVYKVAASE
ELTVEVSNLFGYNAVSFE
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggattcacctgccaatttcgtacatcttcatctgcactcccagtactccctgctggac
ggcgccatccgcatcggcgacctggtcaagaaggccaaggaataccacatgcctgcggtg
gcggttaccgaccacggcaacatgttcggctccctcgagttcttcctgaaggcccaggac
aagggggtcaagccgatcctcggctgtgaagtctatatcgcccccggctcccgtctcgac
aagaaagcccccaccgccgctgacccggtcaccagctaccacctcatcctgctggccgag
aacatgaccggtttcaagaacctctgctacctcagctctgccggctacaaggacggcttc
taccgtcgcccccgcatcgacaaagaactgctggagaagcacagggaaggtcttatctgc
ctctccgcctgtctccagggagagatcgcctacctcgcgggcaggaacaagatggaggag
gccaaggctgccgccatctggtacgccgacatgttcccggggagctactatctcgagatc
caggagaacgggatcccagagcagaccatcgccaacaggcgggtgatggagatcgcgcgc
gagctcaacctgccgctggtcgccaccaacgactgtcactacctcaacaaggaagacgcc
aaggcgcacgagatcctgctctgcatccagaccggcaagaccatgagcgacccgagccgg
atgcgcttcaccactgaggccttctacgtgaagagcccggaggagatggcacgggacttc
cactattgccccgaggcgctggaaaacacggtcaagatcgccgaacgctgccattacgag
ttcgatttcaagacctatcacttcccggcctatgaggcgccgccgggcgaaaccctcgat
gaccagctggagcgcgagtccatccaaggactcaagctgcgcctcgagaagatcaagatc
aagtacccggacctgaccccggaacaggagcaggcctaccacgaccgcctgcgcatcgag
ctggactgcatcaggcacatggggttcccgggctacttcctcatcgttgcggacttcatc
aactgggccaaggaccacggcattccggtcgggccgggcaggggctcggcggccggttcg
ctggtcgccttctgcatcaggatcaccgacatcgacccgatgccctacaacctgctgttc
gagcgattcctcaaccccgaacgtatctccatgccggatatcgacgtcgacttctgccag
gaccgccgcgaagaggtgatccagtacatggtcgagcgctacggcagggagaaggtctgc
cagatcgccgccttcggtaccatggcggcccgcggcgtcatccgtgacgtcgggcgcgcc
ctcgacctcaccttcgctgacgtggataagatcgccaagctggttcccgaggttttgggc
atcaccttggacaaggccatcgagcaggagcccaaactcaaggagttgatggcggccgac
gcgaaggtgaacgaggtcatgaccgtcgcgctgcgcctggaggggcttgcccgtcacatc
tccacccacgcggcgggcctcgtcgttgcgccccggcagatggaagacttctgcccggtc
tacaaggaccagaagaccggctcgctgaccacccagtactcgatgaagtacgtggagaag
gtcggcctggtgaagttcgacttcctcggcctcaagaacctcaccgtcatcgacaacgcc
tgcaagcacatccgtaacggcaaggatcccaacttcgacatcaccctgttgacggacgac
gatcccgaaacctacaagctgctgcaggccggcaacaccaccggcgtgttccagctcgag
tccagcggcatgaaggagctcctggtcaagctgaagccctcctgcttcgaggacatcatc
gcggtctgcgccctctaccgtccgggcccgctcggctccggcatggtggacgacttcatc
gagagaaagcacggccgcaagcagaccgtctacgacctgccgcagttggagccggtcctc
aaggacacctacggcgtcatcgtctaccaggaacaggtcatgcagatctcccgttccctg
gcaggttactcgctcggcggcgccgacctcttgcgccgcgccatgggtaagaaagacgcc
gaacagatggcgaaggaacgcctgaagttcatggaaggctccgagaagctggggctcgat
tccaagaagtgcgccgccatcttcgacctcatggcgaagttcgccgagtacggcttcaac
aagtcgcactccgccgcctatgccctggtcgcctaccagaccgcatacctcaaggcccac
tacccggtggagttcatggccgccctcctcaccgaggacatgagcaacaccgacaaggtg
atcaagagcatcggcgactgccgcgagatggggatcgaggtgctcccgcctgacatcaac
gagtcgctgcgctctttccgcgtgcttgataccgccatgcgcttcggcttgggcgccgtc
aagaacgtgggcgagggggccatcgaggcgatcctggaggcccgcggcgatgagcccttc
aaggacatcttcgacttctgcgagcgggtcgacctgcgccgctgcaacaagagggtcatc
gaagcgctcataaaaagcggtgccttcgactgcaccaaggcgaaacgcgcccagctcatg
gccgtactggaagacgccgccgcgcaagggcagcgcgtgcagcaggagcgcgagagcgcc
caggtgtcgctcttcggcatggccgagatccagcgcggctccaacggcggcggcaaccgg
ctccccgatatcccggagtgggacgagaagtatcgccttggctgcgagaaggaggctatc
ggcttcttcatcaccggccaccccctggaccgctacgtggccgacatgcgccgcttctcc
aacgtggactgttcctccatcaacgaggcgaaggacaagagcgaggtgaagatctgcggc
gtcccggcaagcctcaaggagatcatgaccaagaagggtgaccggatgggcttcgttacc
ctcgaggacctggtcggctcgctggaggtggtggtcttctccgatgtctacgcgcgctgc
tccgagtttctcaaaggcgacgatccggtgcacatcaccggtacggtcgagcatggcgag
aaaggggccaagatcatggccagcgacatcgtcctgttgcgtgatctggtggagcgggag
acgcgcagggtgaacttcaccatagacgcaaaagaggccgatcccgggaagctgaagaca
ctcaaagacatcatctcccgctaccaggggatctgtcgcagcttcctgcaccttgacata
gaaaacagttcgcgagtcaccatccgcctttccgatgtatacaaagtggccgccagcgaa
gaattaacagtggaagtgagtaacctcttcggctataatgccgtgtccttcgagtag
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