Geomonas oryzisoli: KP004_05195
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Entry
KP004_05195 CDS
T07282
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ger
Geomonas oryzisoli
Brite
KEGG Orthology (KO) [BR:
ger00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ger03019
]
KP004_05195 (hrpB)
Enzymes [BR:
ger01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KP004_05195 (hrpB)
Messenger RNA biogenesis [BR:
ger03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KP004_05195 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
CON_HrpB
Flavi_DEAD
ResIII
AAA_30
AAA_19
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
QWV94583
LinkDB
All DBs
Position
1166213..1168690
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AA seq
825 aa
AA seq
DB search
MLKPAVIDTILPELLAALQKGNVAVLQAPPGAGKTTRVPLALLDALSDRGRIVMLEPRRL
AAVNAARYMAQCLGEEVGKTVGYSIRFERKVSKATRIEVVTEGILARRLQGDPLLEGVAA
VIFDEFHERSLTCDLSLALCRDVQLGLREDLRLLVMSATLDAEPVARLLGGAPLVTSEGR
QFPVELRYLKSEPTTRLAETACAGVMKALAETEGDILVFLPGAGDIRRCESILQAQVGPQ
VMIAVLYGDLPFAAQERAILPGDRRKVVLATNIAETSLTIEGVRVVVDTGYSRQLRYDPS
TGLNRLDTMRISAASAQQRAGRAGRVAPGVCYRLWTEHTHSALLPFTAPEIKVSDLAPLA
LDLAQWGVADPASLSFLDAPPAAHLAEGRALLKALGALDQRGAITALGSRMAALPMHPRL
ASMLVGSLDAGHAPLACMLAAILSERDIMPRGSGSISESDLLDRLDAVRERRDPQGARTV
ERLAAYFRGTLGVPDAPVRADADAVGRLLLMAYPDRVARERNPGSGRYLMANGTGAKLSP
RSNLRAQPFIVAVEVEGGAGEGDIHMASAVSLEAIRSGCAAAITRERRVFWEEREGRVVA
RDEERLGAVILSERAAAPEKEEIAAALLLGILSGTGIGGLNWSEHALQYRNRVRFLARVL
PEEQLPDLSDEALAAGAGQWLLPYLQGVRTLAQLAKVDLLQPLKALLDYRQQQLVEKDAP
THLQVPSGSRVALEYPAEGEPFLAVKLQEMFGLAETPRLARGRVPVLIHLLSPARRPIQV
TADLKSFWNGAYREVCKELKGRYPKHPWPDDPWNAPATRHVKKRM
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaacccgccgtcatcgacaccatactccccgaactgctcgcggcgctgcaaaag
ggtaacgtcgccgtgctgcaggcgcctccgggggcgggcaagaccacgcgggtgccgctc
gccctgctcgatgcgctttcggaccgcggccgcatcgtcatgctggaaccgcgccgcctc
gccgccgtgaacgccgcccgctacatggcccagtgcctgggcgaggaggtggggaaaacg
gtcggctacagcatccgcttcgagcgcaaggtttccaaggcaacccgcattgaggtggtg
accgaggggatcctggcccgccggctgcagggcgacccgctgctggaaggggttgcggcg
gtaatcttcgacgagttccacgaaagaagccttacctgcgacctttccctcgctctgtgc
cgcgacgttcagctcgggctgcgcgaggacctgcgcctgctggtcatgtcggcgaccctc
gatgccgagccggtggcgaggcttcttgggggcgcgccgcttgtcaccagcgaggggcgg
cagttcccggtcgagctccgttatctgaagagcgagccgacaacgaggctggccgagacg
gcgtgtgccggggtgatgaaagcccttgccgagaccgaaggggacatcctggtattcctg
ccgggcgccggcgacatcaggcgctgcgaaagcatcctccaggcccaggtcggcccgcag
gtgatgatcgccgtcctctacggggacctccccttcgccgcccaggagcgtgccatcctc
ccgggcgaccgccgcaaggttgtgctcgccaccaacatcgccgagaccagcctcaccatc
gaaggggtgcgggtggtagtcgacaccggctactcccgccagctccgctacgatccctcc
accggcctcaaccgcctcgacaccatgcgtatctccgcggcctccgcccagcagcgcgca
ggtcgtgccggcagggtcgccccgggcgtctgctaccgcctctggaccgagcacacccat
agtgcccttcttcccttcaccgctcccgagatcaaggtttccgacctcgcgccgcttgcg
ctcgacctggcgcagtggggggtagccgatcccgcctcgctgagttttctcgatgcgcct
ccggccgcccacctcgccgagggacgcgcgctgctgaaagccttgggcgctctcgatcag
cgcggcgccatcaccgcactggggagcaggatggctgcactcccgatgcatccgcgcctt
gcctccatgctggtgggctcgctcgacgccggacacgcgccgcttgcctgcatgctggcc
gccatcctgtccgagcgcgacatcatgccgcgcggcagcggcagcatctctgaaagcgat
ctgctggaccggctggatgcggttcgcgaacgccgcgacccgcagggggcgcggacggtg
gaacgcctggctgcctatttccgcggcactctcggcgtacccgacgcccccgtgcgtgcc
gatgccgacgccgtcggccgcttgctccttatggcctatccggaccgggtggcgcgtgag
cggaatcccggctccggacgctacctcatggccaacggcaccggtgccaaactgtccccg
cgcagcaacctgcgggcgcagcctttcatcgtcgccgtcgaggtcgaggggggcgcgggg
gaaggagacatccacatggcgagcgccgtttcactggaggcgatccgctcgggatgcgcg
gccgccataacccgggagcgcagggtgttctgggaggaacgcgaggggagggtggtggcc
cgggatgaggagcggctgggcgccgtcatcctttccgagcgggcggcggctcccgagaag
gaagagatcgccgcggcgctgctgctggggatactgtcggggactggcatcggcgggctc
aactggagcgagcatgccttgcagtaccggaacagggtgcgcttcctggcccgggtgctc
cccgaggagcaattacccgacctctccgacgaggcgctggcggccggcgcgggacagtgg
ctcctcccctatctgcagggggtgcggaccctcgcccaactggccaaggtcgacctgctg
cagcctttgaaggcgctcctcgattaccgccagcagcagctcgtcgagaaggacgcgccc
acgcacctgcaggtcccgagcggctcacgcgtcgcgttggagtatccggcagagggggag
ccgtttcttgcggtcaagctccaggagatgttcgggctggccgagacgcctcggcttgcg
cggggcagggtgccggtgctgatccacctgctgtcgccggcgcggcgtcccatccaggta
acggccgatctgaagagtttctggaacggggcctaccgtgaggtgtgcaaggagttgaaa
ggtcgctatccgaaacacccttggcccgacgacccctggaatgccccggctacgcggcat
gtgaagaagagaatgtga
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