Geomonas oryzisoli: KP004_06730
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Entry
KP004_06730 CDS
T07282
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ger
Geomonas oryzisoli
Pathway
ger03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ger00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KP004_06730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ger03019
]
KP004_06730
Enzymes [BR:
ger01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KP004_06730
Messenger RNA biogenesis [BR:
ger03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KP004_06730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
AAA_22
AAA_19
CMS1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QWV94867
LinkDB
All DBs
Position
complement(1531394..1532836)
Genome browser
AA seq
480 aa
AA seq
DB search
MKFTELQLPELVQKGIEETGFTDCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLITVF
TKLLSQQKTGAVNHPRALILAPTRELVVQIEKDAQALGKHTGFTVQAIYGGVDYMKQRDA
LKAGADIVIGTPGRLIDYLKQKVYSLKDIEALVIDEADRMFDMGFIADLRFILRRLPPYD
KRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQVLYHVARKEKFPLLLGL
LRKMGMERTMIFVNTKREAEYLQDRLNANEFPAKVISGDVEQRKRMKILADFKAGLLPIM
IATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAISLADEDGAFFIEP
IQEFIKQKIPTEWAEDDMFVHDYKRTARPPRRTEEKPGGRGGKSGGRVEKSGRGESRGRG
GRSGSAKEKAEQKDQASAPVESAPAGEAAANGDAPAKRKRRRRKPKAKPAEQQPQQPEQP
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcaccgagctgcagctgccggaactggtccagaagggcatcgaggaaaccggc
ttcaccgactgcacaccgatacaggaaaaggcgcttccccttgccctcaccggcaaggac
gtcgccggccaggcacaaaccggcaccggcaagaccgccaccttcctcatcaccgtcttc
accaaactgctgagccagcagaaaaccggcgccgtcaaccatccccgcgccctcatcctc
gcgcccacccgcgagctggtagtccagatcgagaaggacgcccaggccctcggcaaacac
accggcttcaccgtccaggccatctacggcggcgtggactacatgaagcagcgcgacgcg
ctcaaggccggcgccgacatcgtcatcggcacccccggacgcctcatcgactacctcaaa
caaaaggtctattccctgaaggacatcgaggccctggtcatcgacgaggccgaccgcatg
ttcgacatgggcttcatcgccgacctgcgcttcatcctgagaaggctccccccctacgac
aagcgccagaacctcctcttctccgccacgctgaacacccgcgtcatggaactcgcctac
gagttcatgaacatgccggagaaggtctccgtgacgccggaacagatgaccgccgagcgc
gtggagcaggtgctctaccacgtggcgcgcaaggagaagttcccgctgctcctcggcctg
ctccgcaagatgggcatggagcggaccatgatcttcgtgaacaccaagcgcgaggccgaa
tacctgcaggaccgcctgaacgccaacgagtttcccgccaaggtcatatccggcgacgtc
gagcagagaaaacggatgaagatcctggccgacttcaaggcggggctcctgccgatcatg
atcgccaccgacgtggcctcccgcggcatccacatcgagggggtctctcacgtcatcaac
tacgacctgccgcaggactgcgaggattacgtgcaccgcatcggccgcaccgcccgcgcc
ggcgccgaggggatggcgatctcgctggccgacgaggacggcgccttcttcatcgaaccc
atccaggagttcatcaagcagaagatacccaccgagtgggccgaggacgacatgttcgtc
cacgactacaagaggaccgcgaggcctccgcgccgcaccgaggagaaacccggcggcagg
ggcggcaaatccggcggacgcgttgagaaatccgggcgcggcgagtcgcgcggcagaggc
ggcaggtccggttcggccaaggagaaggcggagcagaaggaccaggcgtccgccccggtc
gaaagcgcgcctgcaggcgaggcggccgctaacggtgatgcacctgccaagcgcaaacgc
cgtcgccgcaaacccaaagcgaagccggcagagcagcaaccccagcagcccgagcagccg
tga
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