Geomonas oryzisoli: KP004_09295
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Entry
KP004_09295 CDS
T07282
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ger
Geomonas oryzisoli
Brite
KEGG Orthology (KO) [BR:
ger00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ger03009
]
KP004_09295 (rlmD)
Enzymes [BR:
ger01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KP004_09295 (rlmD)
Ribosome biogenesis [BR:
ger03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KP004_09295 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Cons_hypoth95
Methyltransf_25
Methyltransf_15
MTS
PrmA
Methyltransf_11
Methyltransf_4
SIMPL
TehB
Motif
Other DBs
NCBI-ProteinID:
QWV95343
LinkDB
All DBs
Position
2098823..2100139
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AA seq
438 aa
AA seq
DB search
MAEPVVVIESLCYGGAGFGRVEGKACFVPCTAPGDRARIRVVKEKRSFLEGELVELLEPS
DLRVVPPCPVFGACGGCDWQFLPYPEQLQQKGTIFADTLARIGKVPREKVLPVAAAPEPF
GYRSRVQVKVSVVAGAVQMGFFRTGSHDVVDFGAGCPLANPQLNRMAAEFRAILPGLPQF
ELIHQIDLSIGDTGEGIAIVHSRGGAGGRLIEALARERSQLPSVAGAFLRSGQKGDLAKV
FGIEALSYRIPAGLIPGSKELTLRFGRGGFSQVNYPQNLELIRTACGWAGLTGKERVLDL
YCGNGNISLPLALQAAEVLGIEGYAPSILDAAANAEANGIGNATFQVSDAAQAVRRLVKR
KERFDLVVLDPPRGGAEAAAELAALAPAKIIYVSCDPATLARDLASLGSNGYQVTRSKPV
DMFPQTYHLESVTELVRA
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggctgagccggtcgttgtcatagaaagtctctgctacggcggcgccggtttcggcagg
gtggaaggcaaggcctgtttcgtcccctgcaccgcccccggcgaccgggcgaggatccgc
gtggtgaaggagaaacgctccttcctggaaggggagctggtcgaactgctcgagccttcc
gacctccgcgtcgtaccgccgtgtcccgtcttcggcgcgtgcggcggctgcgactggcag
ttcctgccgtaccccgaacagttgcagcagaaagggaccatcttcgcggacacgctggcg
cgcatcggcaaggtccccagggaaaaggtgctgccggtcgcggcggcgccggaaccgttc
ggctaccgctcccgcgttcaggtgaaggtatccgtggtcgcaggcgcggtgcagatgggc
tttttccgcaccggctcccatgacgtggtcgatttcggcgccgggtgccccttggccaac
ccgcagctgaaccgcatggcggccgagttccgggcgatcctacccgggctgccgcagttc
gaactcatccaccagatcgacctctccatcggcgacacgggggaggggatcgccatcgtg
cacagcagggggggcgcggggggacgactgatcgaagccctggcccgggagcggtcgcaa
ctcccctcggttgccggcgccttcctgcgcagcggacaaaagggggacctggcgaaggtc
ttcggcatcgaagccctgagctatcgaatccccgccgggttgataccgggctcgaaggag
cttacgctccgattcgggcggggtgggttctcgcaggtgaactaccctcagaacctcgag
ctgatccgtaccgcctgcgggtgggccgggctgaccgggaaagagagggtgctcgacctg
tactgcggcaacggcaacatctccctgccgctggcgcttcaggccgcggaggtcctggga
atcgaagggtatgccccgtccatcctcgatgccgcggccaacgccgaggccaacggcatc
ggcaacgccaccttccaggtgagcgatgcggcccaggccgtccggcgactggtcaagcgc
aaggagaggttcgacctggtggtgctcgacccgccccggggaggggccgaggccgccgcc
gagctcgccgctctcgcaccggcaaagatcatctacgtttcctgcgatccggccacgctg
gcccgcgatctcgcttcacttggcagcaacgggtaccaggtgacccgctcgaagccggta
gatatgttcccgcagacctaccacctcgagagcgttaccgaactggttcgtgcataa
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