Geomonas oryzisoli: KP004_15295
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Entry
KP004_15295 CDS
T07282
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ger
Geomonas oryzisoli
Brite
KEGG Orthology (KO) [BR:
ger00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ger03016
]
KP004_15295
Enzymes [BR:
ger01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KP004_15295
Transfer RNA biogenesis [BR:
ger03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KP004_15295
Prokaryotic type
tRNA splicing ligases
KP004_15295
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QWV92546
UniProt:
A0ABX8J5W9
LinkDB
All DBs
Position
3511837..3513297
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AA seq
486 aa
AA seq
DB search
MNVPAALKRISDTLWELPMSYKEGMLVPARIVASEKLINEMDAGVFEQVSNVATLPGIQR
YAYCMPDGHWGYGFPIGGVAAMDPRSGVISPGGIGFDINCGMRLVLTNLTAEQVQPKLHQ
LVDRLFARIPTGVGCHGFVKLKQDDFRTVVQQGSRWCLKNGFATQEDLDMTEEGGCFPGA
DATHISEKAVERGYNQLGTLGSGNHYCEIQVVQPQNIMDRELADAFGLTTVPNQVVIMFH
CGSRGFGHQVATDYLKLFLSVMERKYGIKIVDRELACAPFHSPEGQAYFSAMKCAVNMAF
ANRQVILHRIREVFSDVFHAAPDELGLRMVYDVAHNTAKLERHLINGSRKELLVHRKGST
RAFGPGLPGLPECYRKTGQPVIIGGSMETGSYLLAGMSTGGDAWFTTAHGSGRTMSRHEA
KKNFRGDKLQREMEQRGIYVRTDSFGGLAEEAGAAYKNIDEVVEATELAGLSKRVARLVP
IGNIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtaccagctgcactgaagcggatcagcgacacattatgggaactgccgatgagc
tacaaggaagggatgctggttcccgccaggatcgtcgccagcgagaagctgatcaacgaa
atggacgccggcgtgttcgagcaggtaagcaacgtcgccacgctccccggcatccagcgc
tacgcctactgcatgcccgacgggcactggggctacggcttccccataggcggggtcgcc
gccatggatccccgctccggcgtgatctctccgggcggcataggtttcgacatcaactgc
ggcatgcggctcgtgctcaccaacctgaccgccgagcaggtccagcccaagctgcaccaa
ctggtcgatcgtctcttcgcccgcatccccaccggggtcggctgccacggcttcgtcaag
ctcaagcaggacgatttccgcaccgtggtgcagcaagggtcgcgctggtgcctgaaaaac
ggcttcgccacgcaggaagacctggacatgaccgaggaaggaggctgcttccctggggcg
gatgccacccacatcagcgagaaagcggtggagcgcggctacaaccagttgggaacactg
gggagcggcaaccactactgcgagatccaggtggtgcagccacagaacataatggaccgc
gagctcgccgatgccttcggcctgaccaccgtccccaaccaggtggtgatcatgttccac
tgcggcagcagggggttcggacatcaggtggccacggactatctgaagcttttcctctca
gtcatggagcgcaagtacggcatcaagatcgtcgacagggaacttgcctgcgctcccttc
cactcccccgaggggcaggcctacttcagcgccatgaagtgcgccgtcaacatggccttc
gccaaccggcaggtgatcctgcaccggatccgcgaggtattctcggacgtcttccatgcc
gcgccggatgaactgggcctgcgtatggtctacgacgtcgcccacaacaccgccaagctg
gaaaggcaccttatcaacggcagccggaaggaactgctggtccaccgcaagggttccacc
cgcgccttcggcccggggctccccggactgccggagtgctaccggaagacgggacagccg
gtgatcatcgggggtagcatggagaccggctcatacctgctggcaggcatgtctaccggg
ggggacgcctggtttaccacggcgcacggcagcggcaggaccatgagccgccacgaggcc
aagaagaactttcgcggcgacaagctgcagcgcgagatggaacagcgcggcatctacgtg
cgcaccgactccttcggcggcctcgcggaggaggcgggtgcggcctacaagaacatcgac
gaggtggtggaggcgaccgaactggccgggctgagcaagcgggtggcgcgcctggtgccg
atcgggaatataaaggggtaa
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