KEGG   Geomonas oryzisoli: KP004_15420
Entry
KP004_15420       CDS       T07282                                 
Symbol
rny
Name
(GenBank) ribonuclease Y
  KO
K18682  ribonucrease Y [EC:3.1.-.-]
Organism
ger  Geomonas oryzisoli
Pathway
ger03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ger00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KP004_15420 (rny)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ger03019]
    KP004_15420 (rny)
Messenger RNA biogenesis [BR:ger03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     KP004_15420 (rny)
SSDB
Motif
Pfam: RNase_Y_N HD HDOD KH_1 KH_KhpA-B DivIVA KH_2 Ribosomal_S18
Other DBs
NCBI-ProteinID: QWV92564
LinkDB
Position
complement(3537254..3538855)
AA seq 533 aa
MKVDITIAILLVLVAAAIGYVIGNILRKKLSDSLVTNAETLAAKMIEDAKRQAEVVAMEA
AVQAKDVVYQAKEELERQFEQESREKRRDLQTLEKRLQQKEENLDKKTNLFDQRDADFLK
REQGLAQREQSLSNKEQGLTQKEEKLDALVGEQKAKLEQIAGMTAAEAKKFLMDSMEDEA
KLDVAKLIKAMEEEARETADKKAKEVLALAMQRYAGEYVAERSVSVVTLPSDEMKGRIIG
REGRNIRALEAATGIDLIIDDTPEAVILSGFNPVRREVAKLSLQKLIADGRIHPGRIEEV
VAKSQEEIEQAMKEAGEQAAFDLGVHGIHPEILKLIGRLKYRTSYSQNVYQHSLEVAFLC
GIMAAELGINVKQAKRAGLLHDLGKAVDHEIEGSHAVIGADIAKKYGESPKIVHAIMAHH
EDEKPATVLAVLVQAADALSGARPGARREMMETYVKRLDDLERIATSFDGVVTSFAIQAG
REIRVMVSSDQVTDDRALVLAKDIAKKIETEMTYPGQIKVNVIRETRATEYAR
NT seq 1602 nt   +upstreamnt  +downstreamnt
gtgaaagtcgacataactattgccattttgctggtgcttgtcgcggccgccatcgggtac
gtgataggcaacatcctgcgcaagaaactctcggattcgttggtaaccaatgcggaaacg
ctggctgccaagatgatcgaggatgccaagcgccaggccgaggttgtggccatggaggcc
gccgtccaggcgaaggacgtggtgtaccaggcaaaggaagaactggaaaggcaatttgaa
caagaaagccgcgagaagcgtcgcgacctgcagaccctcgagaagaggctgcagcaaaaa
gaagagaacctcgacaagaagaccaaccttttcgaccagcgtgatgccgacttcttaaag
agggaacagggtctcgcgcagcgcgagcagtccctgtccaacaaggagcaggggctgacc
cagaaggaagagaagctggacgccctcgtgggcgagcagaaggcgaagctggagcagatc
gccggcatgaccgctgccgaggccaagaagttcctgatggactccatggaagacgaggca
aagctcgacgtcgctaagctgatcaaggcgatggaagaggaggccagggagaccgccgac
aagaaggccaaggaagtcctggccctggcgatgcagcgttacgcgggcgagtacgtcgcc
gagcgcagcgtctccgttgtaaccctgccttccgacgagatgaaaggacgcattatcggc
cgcgaggggcgcaacatcagggccctcgaagccgccaccggcatcgacctcatcatcgac
gacacccccgaagcggtcatcctttccggcttcaacccggtcaggagggaagttgccaag
ctgtcgctgcagaaactcatcgccgacggcaggattcaccccggccgcatcgaggaagtc
gtagcgaaatcccaggaagagatcgagcaggccatgaaggaggcaggggagcaggctgcc
ttcgatctgggcgtgcacggtatccatccggagatcctgaagctcatcgggcgcctgaaa
taccgcacttcctacagccagaacgtttatcagcactcgctggaagtcgccttcctctgc
ggcatcatggctgccgaactcggcatcaacgtgaagcaggcgaaaagggcggggctgctg
catgacctcggcaaggccgttgaccacgagatcgagggctcccacgccgtcatcggcgcc
gacatcgccaagaagtacggcgagtcgcccaagatcgtccacgccatcatggcgcaccac
gaggacgaaaagccggccaccgttcttgccgtcctggttcaggccgcggacgctctttcc
ggtgcgcgccccggtgcgcgccgcgagatgatggaaacctacgtgaagcgtctggatgat
ctggagaggatcgccacctcgttcgacggcgtcgtgacctccttcgccatccaggccggt
cgcgagatccgcgtcatggtttccagcgaccaggtgaccgatgaccgtgccttggtcctc
gccaaggacattgccaagaagatcgagaccgagatgacctacccggggcagatcaaggtc
aacgtgatcagggaaaccagggccaccgaatatgcccgttaa

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