Geomonas oryzisoli: KP004_15420
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Entry
KP004_15420 CDS
T07282
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ger
Geomonas oryzisoli
Pathway
ger03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ger00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KP004_15420 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ger03019
]
KP004_15420 (rny)
Messenger RNA biogenesis [BR:
ger03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KP004_15420 (rny)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
KH_1
KH_KhpA-B
DivIVA
KH_2
Ribosomal_S18
Motif
Other DBs
NCBI-ProteinID:
QWV92564
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Position
complement(3537254..3538855)
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AA seq
533 aa
AA seq
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MKVDITIAILLVLVAAAIGYVIGNILRKKLSDSLVTNAETLAAKMIEDAKRQAEVVAMEA
AVQAKDVVYQAKEELERQFEQESREKRRDLQTLEKRLQQKEENLDKKTNLFDQRDADFLK
REQGLAQREQSLSNKEQGLTQKEEKLDALVGEQKAKLEQIAGMTAAEAKKFLMDSMEDEA
KLDVAKLIKAMEEEARETADKKAKEVLALAMQRYAGEYVAERSVSVVTLPSDEMKGRIIG
REGRNIRALEAATGIDLIIDDTPEAVILSGFNPVRREVAKLSLQKLIADGRIHPGRIEEV
VAKSQEEIEQAMKEAGEQAAFDLGVHGIHPEILKLIGRLKYRTSYSQNVYQHSLEVAFLC
GIMAAELGINVKQAKRAGLLHDLGKAVDHEIEGSHAVIGADIAKKYGESPKIVHAIMAHH
EDEKPATVLAVLVQAADALSGARPGARREMMETYVKRLDDLERIATSFDGVVTSFAIQAG
REIRVMVSSDQVTDDRALVLAKDIAKKIETEMTYPGQIKVNVIRETRATEYAR
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagtcgacataactattgccattttgctggtgcttgtcgcggccgccatcgggtac
gtgataggcaacatcctgcgcaagaaactctcggattcgttggtaaccaatgcggaaacg
ctggctgccaagatgatcgaggatgccaagcgccaggccgaggttgtggccatggaggcc
gccgtccaggcgaaggacgtggtgtaccaggcaaaggaagaactggaaaggcaatttgaa
caagaaagccgcgagaagcgtcgcgacctgcagaccctcgagaagaggctgcagcaaaaa
gaagagaacctcgacaagaagaccaaccttttcgaccagcgtgatgccgacttcttaaag
agggaacagggtctcgcgcagcgcgagcagtccctgtccaacaaggagcaggggctgacc
cagaaggaagagaagctggacgccctcgtgggcgagcagaaggcgaagctggagcagatc
gccggcatgaccgctgccgaggccaagaagttcctgatggactccatggaagacgaggca
aagctcgacgtcgctaagctgatcaaggcgatggaagaggaggccagggagaccgccgac
aagaaggccaaggaagtcctggccctggcgatgcagcgttacgcgggcgagtacgtcgcc
gagcgcagcgtctccgttgtaaccctgccttccgacgagatgaaaggacgcattatcggc
cgcgaggggcgcaacatcagggccctcgaagccgccaccggcatcgacctcatcatcgac
gacacccccgaagcggtcatcctttccggcttcaacccggtcaggagggaagttgccaag
ctgtcgctgcagaaactcatcgccgacggcaggattcaccccggccgcatcgaggaagtc
gtagcgaaatcccaggaagagatcgagcaggccatgaaggaggcaggggagcaggctgcc
ttcgatctgggcgtgcacggtatccatccggagatcctgaagctcatcgggcgcctgaaa
taccgcacttcctacagccagaacgtttatcagcactcgctggaagtcgccttcctctgc
ggcatcatggctgccgaactcggcatcaacgtgaagcaggcgaaaagggcggggctgctg
catgacctcggcaaggccgttgaccacgagatcgagggctcccacgccgtcatcggcgcc
gacatcgccaagaagtacggcgagtcgcccaagatcgtccacgccatcatggcgcaccac
gaggacgaaaagccggccaccgttcttgccgtcctggttcaggccgcggacgctctttcc
ggtgcgcgccccggtgcgcgccgcgagatgatggaaacctacgtgaagcgtctggatgat
ctggagaggatcgccacctcgttcgacggcgtcgtgacctccttcgccatccaggccggt
cgcgagatccgcgtcatggtttccagcgaccaggtgaccgatgaccgtgccttggtcctc
gccaaggacattgccaagaagatcgagaccgagatgacctacccggggcagatcaaggtc
aacgtgatcagggaaaccagggccaccgaatatgcccgttaa
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