Geomonas oryzisoli: KP004_20000
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Entry
KP004_20000 CDS
T07282
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
ger
Geomonas oryzisoli
Brite
KEGG Orthology (KO) [BR:
ger00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ger03016
]
KP004_20000 (thpR)
Enzymes [BR:
ger01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
KP004_20000 (thpR)
Transfer RNA biogenesis [BR:
ger03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
KP004_20000 (thpR)
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
QWV93419
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All DBs
Position
complement(4593672..4594208)
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AA seq
178 aa
AA seq
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MARLFIAVELPGDIKAALSSFRDEIPGLRWVPPDQIHLTLRFLGDVLPQTCAMLKKNLAA
VSFTPFPLTLRGVGHFPPHGHPRVLWVGLEESRALLSLQQQVEAAVVGAGIVPEERGFSP
HITLARIKENASSAVARFESVHRALSFPPFNVEEFILFSSVLTPKGAMHRIEETYRCG
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
gtggccagactgttcatagccgttgaattacctggcgatataaaagccgctctgtcatcc
ttccgcgacgagatccccggcctgcgctgggtgccgcccgatcagatccacctgaccctg
cgctttctgggggacgtcctcccccagacctgtgccatgctgaaaaagaacctcgctgct
gtcagcttcactcccttcccgctcaccctgcgcggcgtggggcacttcccgccgcacggt
cacccgagggtgctctgggtcggcctggaggaatcccgggcgctcctctccctgcagcag
caggtggaagccgccgtggtcggcgccggcatcgtccccgaagagcgcggcttctcccct
cacatcaccctggcccgcatcaaggagaacgcgtcgtccgccgtggcgcgcttcgagtcg
gtgcaccgggctctcagcttcccccctttcaacgtcgaagagttcatcctcttctccagt
gttcttaccccgaagggcgcgatgcaccgcatcgaagaaacctaccgctgcggctga
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