Geomonas oryzisoli: KP004_20380
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Entry
KP004_20380 CDS
T07282
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
ger
Geomonas oryzisoli
Pathway
ger03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ger00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KP004_20380 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ger03400
]
KP004_20380 (uvrB)
DNA repair and recombination proteins [BR:
ger03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KP004_20380 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KP004_20380 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_16
AAA_22
Kinesin
DUF87
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
QWV93485
UniProt:
A0ABX8J5B6
LinkDB
All DBs
Position
4685235..4687223
Genome browser
AA seq
662 aa
AA seq
DB search
MDKFELVTGFQARGDQPRAIEELSEGVLRGDQHQVLLGVTGSGKTFTMAQVIASCNRPAL
VLAPNKTLAAQLYGEFKELFPNNAVEYFVSYYDYYQPEAYIPSSDTFIEKDSSINDEIDK
FRHAATRSLLTRRDVIIVASVSCIYGIGSPESYQEMQIRVREGDDLGRDELLKRLVEIQY
ERNDVDFHRGSFRVRGDTVEVFPAHDDERAIRIEFWGDTVEAISEIDPLRGVQLQKLPRF
AIYPASHYVASRQTLERAVEQIRLELEERIRYFKEQNMLLEAQRIEQRTFFDIEMMEQMG
FCQGIENYSRHFDGRQAGEPPYTLIDYFPDDFLLVVDESHITVSQVGGMYRGDRSRKETL
VNFGFRLPSALDNRPLTFQEFTRKLNQTIYVSATPAEYELKMSGGVVVEQLIRPTGLIDP
VIEVRPAAGQVDDLLHEVRLTAERGERILVTTLTKRMAEELTDYYRELGIRVRYLHSDID
TFQRMEILRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTCGR
AARNVSGRVLMYADKITGSMKDAIDETIRRRELQQAYNEEHGITPESVKRLIANVLQAPE
EKDYVTVPVKGEDFLNPKDLEKTLKRLKKEMLAAAKAQEFERAAELRDKIKRLEVAEITK
GN
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggacaaattcgaactggtaaccggtttccaggcgcggggcgaccagccgcgcgccatc
gaagagctttccgaaggggtgctgcgcggcgaccagcaccaggtcctgctcggggtcacc
ggctccggcaagaccttcaccatggcgcaggtcatcgcctcgtgcaaccgccccgccctc
gtgctcgctcccaacaagaccctcgcggcccagctctacggcgagttcaaggagctcttc
ccaaacaacgccgtcgaatacttcgtttcctactacgattactaccagcccgaagcctac
atcccctcctcggacaccttcatcgagaaggactcctcgatcaacgacgagatcgacaaa
ttccgccatgccgcgaccaggagcctgttgacccggcgcgacgtgatcatcgtcgcctcg
gtttcctgcatctacggcatcggctcgccggaatcgtaccaggagatgcagatccgggtg
cgcgagggggacgatctcggccgcgacgagctgttgaagcgcctggtggagatccagtac
gagagaaacgacgtcgacttccaccgcggcagcttccgggtgcgcggcgacaccgtcgag
gtgttccctgctcacgatgacgagcgcgccatccgcatcgagttctggggcgacaccgtg
gaggcgatctcggagatcgacccgctgcgcggcgtgcagctccagaaactgccgcgtttc
gccatctacccggcgtcgcactacgtggcgagccgccagaccctggagcgggccgtcgag
cagatccggctcgaactggaggagcgcatccgctacttcaaggagcagaacatgctcctg
gaggcgcagcgcatcgagcagcgcaccttcttcgacatcgagatgatggagcagatgggc
ttttgccaggggatcgagaactattccaggcacttcgacgggcgccaggcgggggagccc
ccctacacgctcatcgactacttccccgatgatttcctgctggtggtggacgagtcgcac
atcaccgtgtcgcaggtgggtgggatgtatcgcggcgaccggagccgcaaggaaaccctg
gtcaacttcggcttccggctcccctcggccctggacaaccggccgcttaccttccaggag
ttcacccggaagctgaaccagaccatctacgtctcggcgaccccagcggagtacgagctg
aagatgtccgggggcgtcgtggtggagcagctgatccgccccaccggcctcatcgatccg
gttatcgaggtgcgtcccgcggcggggcaggtggacgatctgctgcacgaggtccgtctc
accgccgagcggggcgagcgcatcctggtcaccaccctcaccaagaggatggcggaggag
cttaccgactactaccgcgaactcggtatccgggtgcgttacctgcactccgacatcgac
accttccagcgcatggagatcctgcgcgatttgcggctgggcgaattcgacgtgctggtc
ggcataaacctgctgcgcgaggggcttgacctccccgaggtgtcgttggtcgccatcctt
gacgccgacaaggaagggttcctgcgttcgacccgctccctgatccagacctgcggtcgc
gccgcgaggaacgtgtccgggcgggtgctcatgtacgccgacaagataaccgggtcgatg
aaggatgccatcgacgagaccatcaggcgccgtgagctgcagcaggcctacaacgaggag
cacggcatcacgcccgagagtgtgaagaggctgatcgccaacgtgctgcaggcacccgag
gagaaggactatgtcacggtgccggtgaagggggaggatttcctcaatcccaaggacctg
gagaagacgctgaagcggttgaagaaggagatgctggccgccgccaaggcccaagagttc
gagcgggcggcggagctgcgcgacaagatcaagcggctcgaggtggcggaaattaccaaa
ggcaattga
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integrated database retrieval system
