Gemmata sp. SH-PL17: VT84_00245
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Entry
VT84_00245 CDS
T04358
Symbol
rimO
Name
(GenBank) Ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
ges
Gemmata sp. SH-PL17
Brite
KEGG Orthology (KO) [BR:
ges00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ges03009
]
VT84_00245 (rimO)
Enzymes [BR:
ges01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
VT84_00245 (rimO)
Ribosome biogenesis [BR:
ges03009
]
Prokaryotic type
ribosomal protein modification factors
VT84_00245 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
TRAM
CLP1_P
FlgO
Motif
Other DBs
NCBI-ProteinID:
AMV22807
UniProt:
A0A142X6Z5
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All DBs
Position
59649..61058
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AA seq
469 aa
AA seq
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MSVKSLPLTSTPGTGAPGAPESKGNYAFISLGCPKNTVDSERMLGKLAQDGYALQPGADG
ADVVIVNTCGFIEPARQESLAVIREMLDLKRAGKVGAVVVAGCMAERQRDVLLEQVPEVD
QIVGVFGREEIADVVDRAVSQRDEQKSLFRPAPVRALEDTARLRITPRHFAYLKISEGCD
RLCTYCAIPKMRGKHVTKPIEEIIREAHELVADGVRELIIVAQDTTYYGMDLYGRTRLAE
LLRELDKVDGIEWVRTLYAYPEHISDELIETFAGAKKIIPYLDMPLQHINDRVLKRMIRR
VDRAATEKLLLRLREKWPDLAIRTTFITGFPGETDAEYEELKQFVADFKFERVGVFPYSL
EPGTPAEKLDGHIPEDVKQARVAAIMEVQQRVAFGWAEAQVDKEHPVIIDGPDPEFANHF
RGRTYADAPEIDCEVRVKGKNLKPGDFVRAKITAADGYDLTAKALGKPW
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtgaagagtctcccgctgacctcaactcccggaaccggcgcgcctggcgccccc
gaatccaagggcaactacgcattcattagtttgggctgcccgaagaacaccgtggacagc
gagcgcatgctcggcaaactcgcgcaagacggttacgccctccagcccggggccgacggc
gcggacgtggtcatcgtgaacacgtgcgggttcatcgagccggcccgccaggagtcgctc
gcggtcatccgcgagatgctcgatctcaagagggccggcaaggtcggcgcggtggtcgtg
gccgggtgcatggccgagcgccagcgcgacgtgctcctcgaacaggtgcccgaggtcgat
caaatcgtcggcgtgttcgggcgcgaagagatcgcggacgtcgtggaccgcgccgtctcc
cagcgcgacgagcagaagtctctgttccgcccggccccggtccgtgctcttgaggatact
gcccgcctccgcatcaccccgcgtcacttcgcgtacctcaagatcagcgaggggtgcgac
cggctctgcacgtactgtgcgatcccgaaaatgcgcgggaagcacgtgacgaagccgatc
gaggaaatcatccgcgaggcacacgaactcgtcgccgacggcgtgcgcgaactcattatc
gtggcccaagacaccacgtactacggaatggacctgtacggccgcacgcggctcgcggaa
ttgctgcgcgagttggacaaggtagacggcatcgagtgggttcgcacgctctacgcctac
cccgaacacatttcggacgagctgatcgaaacgttcgccggcgccaaaaagatcattccg
tacctggacatgccgctccagcacatcaacgaccgcgtgctgaaacgcatgatccgccgt
gtggaccgcgccgcgaccgaaaaactgctcctgcggttgcgcgagaagtggccggacctc
gcgatccgcaccacgttcatcacgggattccccggcgaaactgatgcggaatacgaggaa
ctcaagcaattcgttgcggacttcaaattcgagcgcgtcggcgtgttcccctactcactc
gaaccgggcacgccggcagaaaagctcgacggccacattccggaagatgtaaagcaggcg
cgcgtggccgcgatcatggaagtgcaacagcgggtcgcgttcgggtgggcggaggcccag
gtcgataaagagcacccggtcattatcgacggcccggacccggagttcgcgaaccacttc
cgcgggcgcacctacgcggacgcgccggaaatcgattgcgaagtacgagtgaagggcaaa
aacctcaagcccggcgacttcgtgcgggcgaaaatcaccgccgccgacggttacgatctt
accgcaaaggcactgggcaaaccgtggtga
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