Gemmata sp. SH-PL17: VT84_02305
Help
Entry
VT84_02305 CDS
T04358
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ges
Gemmata sp. SH-PL17
Pathway
ges03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ges00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VT84_02305 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ges03400
]
VT84_02305 (mfd)
Enzymes [BR:
ges01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VT84_02305 (mfd)
DNA repair and recombination proteins [BR:
ges03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VT84_02305 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AMV23212
UniProt:
A0A142X8X7
LinkDB
All DBs
Position
577832..581293
Genome browser
AA seq
1153 aa
AA seq
DB search
MTTAAVAAPADAGLRALPSLLEKTEGWAELRAALLSGRSGTVDGAWGSSAALAAATLAAE
TPGTLLVVVPNPTDVEPWQEDIASFTGARPALFEAWESWPVTSNKGKLDPITTSRLRLLQ
QLMSSAPKIVVCGVASVCQPVPERADLAARGRTISVNEIVDPSELAEWLVTNGYKRVDAV
EYPGEFSRRGGICDVFPPDAPDPYRFEFFGDEVESIRSFAAGSQRSLEKKNSVVLLGIED
NPSPTPPLNGEGLNTEKGSAPPSFLGKGVGGLGSARSRPRGHIADYLPPDSWVVLVEPRE
LKEQAKHFYERVATTEGLHSPEQAFAHLMKRPSVVLSALPRPSVEASVHLRVESVNRFSG
SVHRVRDELDSIAHNSSARVLIACQSEAEVHRLTEVLKAGKLAESHRLQLVTGHVRGGFR
LVESGTIVLGSHEIFHKDLLPPGVKAQTRSSRQIESRAIDSFLDLNDGDYVVHVAHGIAR
FRGMHMLEKSRGQDTEFGEEGAEPSSSRRAESRTAGPATEEHLVLEFRDGMFLYVPATRI
DLVQKYVGGSQSEPALSKPGGTSWGRKKEKVAEAVRDMAAEMINIQAVRQAVPGHQFPPD
SDWQKEFEAAFPYQETPDQLSAIVEVKGDLEKSKPMDRLICGDVGYGKTEVAIRSAFKAV
DSGKQVAILVPTTVLAEQHYRTFTQRFAEYPFVVDVVNRFRGGAKQKETLKKLATGEVDV
IVGTHRLLSKDVKFKDLGLVVIDEEQRFGVEHKERLKHLRAMVDVLTMTATPIPRTLHAS
LLGIREISNLETPPADRQPVETHITRWDDKLIRNAILREMNRGGQVYFVHNRVQDIFDIA
TKVRILVPEAKVTVGHGQMDAHDLEKAMVGFVRKDADILVATTIIESGLDIPNANTIFIN
DADTYGLADLHQLRGRVGRSKHRSYAYFIVNPLKLLNPTAQRRLKAIEEFTELGAGFKIA
MRDLEIRGAGNILGAEQSGHIAAIGYELYCQLLENAVRALKQQAPKVSVEVTVDLPWPAY
LPRDYVPGQKLRIEVYRRLARLRDPAKLADFRQELRDRYGPHSDPVEWLLRTTEVRLLCV
KWQVASVHRHDHNLVFTYRNPDRAKQLVAASKGRLKIVDEKSIYLRLKNEEDNPEGLYKL
LLGVLKPAQSTGK
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgacgacggccgctgtcgcagcgccggcggatgccggtttacgcgcccttcccagcctc
ttggaaaagacagagggctgggccgaactgcgcgctgcgctcctctccgggcggagcgga
accgtagacggcgcgtggggatcgtctgcggcgctagctgcagcgaccctcgcggccgaa
acgcccggcacgttgctcgtggtcgttcccaatcccaccgatgtcgagccgtggcaggaa
gatatcgcgtcgtttacgggcgcacgccccgcgctgtttgaggcgtgggaatcgtggccg
gtgacttccaataaggggaagctcgacccgatcacgacgtctcgactgcggttactccaa
caactcatgtcgagcgcgcccaaaatcgtagtgtgcggcgtcgcgtcggtgtgccagccg
gtgccagaacgcgcggacctggccgctcggggacgcacgatcagtgtgaacgagatcgtg
gacccgagcgaactggccgagtggctggtcacgaacggctacaagcgcgtggacgcggtc
gagtacccgggcgagttcagccgccgcggggggatctgcgacgtcttcccaccggatgcg
cccgacccgtaccggttcgagttcttcggcgacgaagtggaatcgatccgctcgttcgcg
gccggctcacagcggagtttggagaagaagaacagtgtcgtgctgttgggaatagaagac
aacccctccccaacccctcccctaaacggagaggggcttaacacagaaaagggttctgct
cccccttcctttttagggaagggggttggggggttaggttctgcccgaagtcgcccgcgg
gggcacatcgcggattacctgccgcccgattcgtgggtcgtgctcgtcgagccgcgcgag
ctgaaggagcaggccaagcacttctacgagcgcgtcgcgaccacggaagggctgcactcg
ccggaacaggcgttcgcgcacctgatgaagcgccccagcgtggtgctctccgcgctcccg
cggcccagtgtggaggcgtcggttcacctgcgcgtcgagtcggtgaaccgcttcagcggg
agcgtacaccgcgtgcgcgacgaactcgattcgatcgcccacaactcgtccgcgcgcgtg
ctgattgcgtgccagagcgaggcggaggttcaccggctcacggaggtgctgaaggcgggc
aaactcgcggagtcgcatcggctccaacttgtgacggggcacgttcgcggcgggttccgg
ttggtcgagagcgggaccatcgttctcggtagccacgagatcttccacaaggatctgctg
ccgcccggcgtgaaggcacaaacgcgctccagccgccaaatcgagtcgcgcgcgattgac
tcgttcctcgacctcaacgacggcgactacgtcgtccacgtcgcccacgggatcgcccgg
ttccgtgggatgcacatgctcgaaaagtcccgggggcaggacaccgagttcggtgaagag
ggcgccgagccgagttcttcccgaagggctgagtcccgaaccgccggtcccgcgacggaa
gagcacctcgtgctcgagttccgcgacgggatgttcctctacgtcccggccacgcgcatc
gacctcgtgcagaagtatgtgggtgggtcgcagtcggaaccggcgctgagcaagcccggc
ggtacctcgtgggggcgcaagaaggaaaaagtggccgaggccgtgcgcgacatggcggcc
gagatgattaacatccaggccgtgcggcaagctgtcccggggcaccagttcccgcccgac
tccgactggcagaaagagttcgaggccgcgttcccgtaccaggaaactccggaccaactt
tccgcgatcgtcgaggtgaaaggcgacctggaaaaatcaaagccaatggaccgcctcatt
tgcggcgacgtcggctacggcaaaaccgaggtcgcgattcggtccgcgttcaaggcggtc
gatagcggcaaacaggtcgcgatcctcgtgcccacgacggtgctcgcggagcagcactac
cgcacgttcacgcagcggttcgccgagtacccgttcgtagtcgatgtggtgaaccgcttt
cggggcggggccaaacagaaagagacactgaagaagctcgcaacgggtgaagtggacgtg
atcgtcggcacgcaccgcttgctctcgaaagacgtaaagttcaaagacttgggcctcgtg
gtgatcgacgaggaacagcggttcggcgtcgagcacaaggagcgactcaagcacttgcgc
gcgatggtggacgtgctcacaatgaccgcgacgcccattccgcgcacgctgcacgcctca
ctactcggtatccgcgaaatcagcaacttggaaacaccccccgcggaccgccagccggtg
gagactcacatcacgcgctgggacgataaactcattcgtaacgcgatcttgcgcgaaatg
aaccgcggcggacaggtgtacttcgttcacaaccgcgtgcaggacatcttcgacatcgcg
acaaaggtccggattctcgttccggaagcgaaggtgacggtcgggcacgggcagatggac
gcgcacgatctcgaaaaggcgatggtgggattcgtgcgcaaggacgccgacatcctggtt
gcgaccacgatcatcgaaagcggcctcgatattccgaacgcgaacaccatcttcatcaac
gacgcggacacctacgggctggcagatctgcaccagttgcgcgggcgcgtcgggcggtcg
aagcaccgttcgtatgcgtacttcatcgtgaacccgctgaagctactcaatcccacagca
cagcggcggttgaaggcgatcgaggagttcaccgaactgggggccgggttcaagatcgcg
atgcgcgacctggagatccgcggggccgggaacattctgggtgcggagcagagcgggcac
atcgcggccatcggctacgaactgtactgccagctcctcgaaaacgcggtgcgggcgctg
aaacagcaggcgccgaaggtgtcggtggaagtcacggtcgatctgccgtggcccgcgtac
ttgccgcgcgactacgtgccgggccagaagttgcgcatcgaagtgtaccggcggctcgcg
cgactccgcgacccggcgaagctcgccgacttccggcaggaactccgggaccgctacggc
ccgcactcggacccggtcgagtggctgctgcgcacgacggaagttcggctcctgtgcgtg
aagtggcaggtcgccagcgttcaccgccacgatcacaatctggtgttcacctaccgcaac
ccggaccgcgccaagcaactcgtcgccgccagcaaggggcggctcaagatcgtggacgag
aagagtatctacctgcgtttgaagaacgaggaggacaatccggaggggttgtacaaactg
ctacttggtgtgctgaagccggcccaaagtacggggaaataa
DBGET
integrated database retrieval system
