Gemmata sp. SH-PL17: VT84_05405
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Entry
VT84_05405 CDS
T04358
Symbol
rpoA_1
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ges
Gemmata sp. SH-PL17
Pathway
ges03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ges00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VT84_05405 (rpoA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ges03021
]
VT84_05405 (rpoA_1)
03400 DNA repair and recombination proteins [BR:
ges03400
]
VT84_05405 (rpoA_1)
Enzymes [BR:
ges01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VT84_05405 (rpoA_1)
Transcription machinery [BR:
ges03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VT84_05405 (rpoA_1)
DNA repair and recombination proteins [BR:
ges03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VT84_05405 (rpoA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
TPR_2
TPR_8
TPR_1
TPR_16
TPR_14
TPR_19
TPR_6
TPR_7
TPR_17
TPR_12
TPR_9
TPR_CcmH_CycH
ANAPC3
IMS_HHH_1
Wzy_C_2
Ubiquitin_5
Motif
Other DBs
NCBI-ProteinID:
AMV23828
UniProt:
A0A142X9V1
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All DBs
Position
1301170..1302732
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AA seq
520 aa
AA seq
DB search
MPIFGTARYFRRLSRDLPTRGKVRLVSGVAPLLSFVDTRPSAGRDACSAERGRRSGDQWG
PDVTESLIDLRALLVEREDFEGGMVGRLREGLAQGGPQVRALKDIIDTLTKRLAVAAPPQ
QKKIHLKLGVANYFLGHVRVAVDNLLKAEGPLAAFFLGQAHVTLGQSRQYAEDGADTTDH
YDAAVKAFERAEKSGYAPQSVQLQRAGVLRLQGHLGESKTILAKLKDAAAHNAEYYYQEG
ALAEAEGDIPRAAKYFERAVELEPRHSAALFRLGFLNDQQGNDYEAIGYYERCLKYPPVG
KGVLYNLGVLYEDNDMYDKAADCYRRLAKADPRDERAKLFVKDSEASLSMHYDPEDEQLR
MADRVVLEIPITDFELSVRSRNCLKRMNIRTLGDLTRVTESQLLASKNFGETSLEEIKII
MNAKQLRIGQSLDQGQQYEFRYRPQQNLSPEEQATLNKPVSDLNLSVRARKCMNRLNIGT
LGELVQRTADELLEAKNFGQTSLTEVRERLGQFNLKLRGD
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgcctatcttcggcacggcacgttattttcgccggctctcgcgcgatctgccgacgcgc
ggcaaggtccggctagtgagtggggtcgcaccgcttctttccttcgtggacactcggccg
agtgccgggcgggacgcttgttccgctgagcgcggtcggaggagcggcgatcagtggggg
ccagacgtgacggaatctctcatcgatctgcgggcgcttctcgtcgagcgcgaagacttt
gaaggcgggatggtcgggcggctgcgtgaggggttggcccagggcgggccacaggttcgt
gccctcaaagacatcatcgacacgctcacgaagcggctcgcggtcgcggccccgccgcaa
caaaagaagatccacctcaagctcggtgtcgccaactactttctcgggcacgtccgcgtc
gcggtggacaacctgctgaaggcggaaggcccgttggccgcgttcttcctcgggcaggcc
cacgtgacgctcggtcagtcgcgccagtacgcggaagacggggccgacacgaccgaccac
tacgacgcggccgtgaaagcctttgagcgggcggaaaagtcgggctatgcgccgcaatcg
gtgcagctccagcgcgccggtgtgctccggttgcaggggcaccttggtgaatcgaagacc
atcctcgccaaactcaaggacgcggccgcgcacaacgcggaatactactaccaggaaggc
gcgctcgcggaagccgagggcgatattccccgggccgcgaagtacttcgagcgcgccgtt
gaactcgaaccccggcactcggcggccctcttccggttgggcttcctgaacgaccagcag
gggaacgactacgaggccatcgggtactacgagcggtgcctgaagtacccgccggtgggg
aagggcgtcctgtacaacctcggcgtgctgtacgaagacaacgacatgtacgacaaggcc
gcggactgctaccgccggctcgcgaaggccgacccgcgcgacgagcgcgccaagctgttc
gtgaaggactccgaagcgtcgctctcgatgcactacgatccggaggacgaacaactccgc
atggccgaccgcgtcgtgctggagatcccgatcaccgacttcgagctgtcggttcgcagc
cgcaactgcctcaagcggatgaacatccgcacgctcggcgacctcacgcgcgtcaccgag
tcgcaactgctcgcgagcaagaacttcggcgaaacgtcgctcgaagagatcaaaatcatc
atgaacgcgaagcaactgcgcatcgggcagtcgctcgaccaggggcaacagtacgagttc
cgttaccgcccgcagcagaacctcagcccggaagaacaggccacgctcaacaagccggtg
agcgacctgaacctctccgttcgtgcgcgcaagtgcatgaatcggttgaacatcggcaca
ctcggcgaactcgtccagcgcaccgccgacgagctgctcgaggccaagaacttcggccag
acctcgctcacggaagtccgcgagcgcctcggccagttcaacctcaagctccgcggggac
tga
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