Gemmata sp. SH-PL17: VT84_08765
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Entry
VT84_08765 CDS
T04358
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase PcrA
Organism
ges
Gemmata sp. SH-PL17
Pathway
ges03420
Nucleotide excision repair
ges03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ges00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VT84_08765 (pcrA)
03430 Mismatch repair
VT84_08765 (pcrA)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
Intein_splicing
UvrD_C_2
Viral_helicase1
Hint_2
AAA_30
PcrA_UvrD_tudor
AAA_12
ResIII
DUF3553
AAA_16
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AMV24475
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Position
2059036..2062377
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AA seq
1113 aa
AA seq
DB search
MSDSNDLLADLTDDQRAAVMHGEGPLLILAGAGSGKTRVITRRVAHLLRSGVRASNILAI
TFTNKAASEMKNRVEKLAPGNRVWVSTFHSLGARLLRQYAERLGFDRNFTIYDVDDRNKL
VKDALEASGMDNVKFSPERVGSAISKAKNQLLTPPQYERTATDFFQQVVGKVYHGYEKRL
RKANAMDFDDLLYLPAMALKTNEELRAELDARFKYVLIDEYQDTNSAQYQIVKQLSLNYP
NLCVVGDPDQCLLPGTLVDTPSGRKPIEQIRDGDEVMSGIGWGKVAPMRVDKVMVNPHRG
KVMRVTVEGGIVLRATPNHVCFARLQPDPNLHHVYLMWKRGVGFRLGTTRGVRTSKSGPL
MSGLQVRTNQEVADAMWIVRTCRSSSEARFHEQFLSVKYGIPTMVFFVRGRNMGISQDLV
DRLFREIDTCAAAARLMADFHLDRRYPHHRPGAVTRGGIARRFVQFTVFGDPRPKTGKRW
HEHRVQVITSGAELRAKAMAAALPVRNGNKGTWRIETSRKGYDDALLLAESINKVDDFEL
VSRARLTKSKAFPFMPASHLQPGMVVPVCVGNGIEERLVESVEWEDYDGPVYDLSVPDTR
NFVANGVVVHNSIYKWRGSDIKIILDFERDFPDSRTITLAQNYRSTKSIIHAASVLIDHN
KQRKKKDLVTDNPQGDPVRVITFDNGLDEAEGVVLRIKEAAKSGKFKYRDHAIFMRINAL
TRSLESAFVKHGVPFQIVKGLAFFERKENRDVLAYLRLLANPQDTVSFLRVVNEPGRGIG
KVSLDKLQGFAADQEIGLLEAAGQVARITEIRGKAVSGLRDFHRMMSDMRSRLALPPHEL
VQLVLEKSGYEAMLRDSTDEDDAERLANVGELVTAAKQFWDEDNTRTITDFLEQITLASD
VDGWDEQADHVSVMTLHASKGLEFPVVYVLAVEEGLLPHERSMGRDDEIEEERRLCFVGM
TRAMKELYMCHARMREFRGQLNYCIPSGFLQELPRGGVEFIDPSMARNAARTAADEWRLK
ASSAAKDWADTGARPFIPPRKPNPELKPTIPDAPDTGLAVGVLVQHEEFGLGNVTDVSGY
GALRRVKIRFPAHGEKVFAGDKIRLKVVGRKKA
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattcaaacgacctgctcgccgacctcaccgacgatcaacgggctgcggtgatg
cacggggaggggccgctcctgatcctcgcgggcgcggggagcgggaagacgcgcgtgatc
acgcgccgggtcgcgcacctgctccggtccggcgtgcgcgcgagcaacatcctggcgatc
acgttcacgaacaaggccgccagcgagatgaagaaccgcgtcgagaaactggcgccgggc
aaccgggtgtgggtgagcacgttccacagcctcggcgcgcgcctcctgcgccagtacgcg
gagcgcctcgggttcgaccgcaatttcaccatctacgacgtggacgaccgcaacaagttg
gtgaaggacgcactcgaagcgagcggcatggacaacgtgaagttcagcccggagcgcgtc
ggcagcgcgatcagcaaggcgaagaaccaactcctcacgcccccgcagtacgagcgcacc
gccacagacttcttccagcaggtcgtggggaaggtgtaccacgggtacgagaagcggctc
cgcaaggccaacgcgatggacttcgatgacctgctgtacctccccgcgatggcgctcaag
acgaacgaggagctgcgggccgaactcgacgcgcgcttcaaatatgtgctcatcgacgag
taccaggacaccaactcggcgcagtaccagatcgtcaagcagctcagcctgaactacccg
aacctgtgcgtggtcggggatccggaccagtgcctgctcccgggcacactcgtcgacacc
ccgagcgggcggaagccgatcgaacagatccgcgacggcgatgaggtgatgtccggtatc
gggtgggggaaggtcgcgccgatgcgagtggacaaggtgatggttaacccccaccggggt
aaggtgatgcgggtcacggtcgagggcgggatcgtgctccgggcgacgccgaaccacgtc
tgcttcgcccggctccaacccgatcccaatttgcaccatgtgtacctcatgtggaagcgc
ggggtcggtttccggttggggacgacgcgcggggtgcgcacgagcaagagcggcccgctc
atgtccggcctccaagtgcgcaccaatcaagaagtcgcggacgcgatgtggatcgtgcgc
acctgccgctcgtcgtccgaagcccgtttccacgaacagttcctgtcggtgaagtacggt
atcccgacgatggtgttcttcgttcgcgggcggaacatggggatcagccaggatctggtc
gaccgcctcttccgcgagatcgacacgtgcgccgcggccgcccggttgatggcggacttc
catttggatcggcgctacccgcaccaccgccccggggccgttacgcgcggcgggatcgcc
cggcggttcgttcaattcacggtgttcggcgacccgcgcccgaaaacggggaagcggtgg
catgagcatcgtgttcaggtcattacgtccggtgcggagctgcgggccaaggcgatggca
gctgcgcttccggtgcgtaacggtaacaagggaacctggcggatcgagacgtcacgtaag
gggtacgatgacgcacttttgctcgcggagtcgattaacaaggtcgacgactttgaactg
gtctcccgcgcgcggttgaccaagtccaaagcgttcccgtttatgccggccagccacctg
caaccgggaatggtggtgcccgtgtgcgtcgggaacggaatcgaagagcgcttggtggaa
tcggtggagtgggaagattacgacggtcctgtgtacgacctgtcggttccggacacgcgc
aatttcgtcgccaacggggtcgtggtccacaactcgatttacaagtggcgcggctcggac
atcaaaatcatcttggatttcgagcgcgacttcccggactcgcgcaccatcacgctggca
cagaactaccgcagcacgaagtcgatcatccacgcggccagcgtgctcatcgaccacaac
aagcagcgcaagaagaaggatctcgtcaccgacaacccacaaggcgacccggtccgcgtg
atcacgttcgacaacgggctggacgaggccgagggcgtggtgctgcgcatcaaagaggcc
gcgaagagcggcaagttcaagtaccgcgaccacgcgatcttcatgcgcatcaacgcgctc
acgcggtcgctcgaaagcgccttcgtcaagcacggtgtgccgttccagatcgtgaagggg
ctggcgttcttcgagcgcaaagagaaccgcgacgtgctcgcgtacctgcggttgctcgcg
aacccgcaggacaccgtgagcttcctccgcgtcgtgaacgaacccggccgcgggatcggc
aaggtgtcgctggacaagctccaggggttcgccgcggaccaagagatcgggctgctggaa
gcggccgggcaggtcgcgcggatcaccgagatccgcgggaaggccgtgagcgggctgcgg
gatttccaccggatgatgtcggacatgcgatcgaggctcgccctcccgccgcacgaactc
gttcagctcgtgctggagaagtcgggctacgaggccatgctgcgcgactcgaccgacgag
gacgacgcggagcggctcgcgaacgtgggcgaactcgttaccgccgcgaaacagttctgg
gacgaggacaacacccgcaccattacggacttcctcgagcagatcacgctcgcgtcggac
gtcgacggctgggacgagcaggccgatcacgtctccgtgatgacgctgcacgcctcgaag
gggctggagttccccgtggtgtacgtcctcgcggtggaagaagggctgttgccgcacgag
cgcagcatggggcgcgacgacgagatcgaagaggagcgccggttgtgcttcgtaggcatg
acgcgcgcgatgaaggaactgtatatgtgccacgcccggatgcgcgagttccgtgggcag
ttgaactactgcatcccgtccgggttcttgcaggagttgccgcgcggcggcgtggagttc
atcgacccgtcgatggcccgcaacgccgcacgcaccgcggccgacgagtggcgcctgaag
gcgagttcggccgcgaaggactgggccgataccggcgcccggccattcatcccgccgcgg
aagccgaacccggaactgaagcccaccatccccgacgcgccggacaccggactggcggtg
ggcgtactagtccagcacgaggagttcggcctcggcaacgtgacggacgtgagcggctac
ggcgccctgcgccgcgtgaagatccgcttccccgcgcacggcgaaaaggtcttcgcgggc
gacaagatccgactcaaggtcgtcggccgcaagaaggcgtag
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