Gemmata sp. SH-PL17: VT84_09670
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Entry
VT84_09670 CDS
T04358
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ges
Gemmata sp. SH-PL17
Pathway
ges03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ges00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VT84_09670 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ges03021
]
VT84_09670 (rpoC)
03400 DNA repair and recombination proteins [BR:
ges03400
]
VT84_09670 (rpoC)
Enzymes [BR:
ges01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VT84_09670 (rpoC)
Transcription machinery [BR:
ges03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VT84_09670 (rpoC)
DNA repair and recombination proteins [BR:
ges03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VT84_09670 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AMV24651
LinkDB
All DBs
Position
2215259..2219659
Genome browser
AA seq
1466 aa
AA seq
DB search
MSTAANNNKNADASEGTSYERINDFGAVRISLASPQDIHSWSHGEVKKPETINYRTYRPE
KDGLFCEKIFGPEKDWECSCGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIQLAAHVV
HIWFFKAMPSRLGTLLDMKTTNLEKIIYFQDYVVINPGDTEVTKLKERELLNEEQYKEKR
GEHGDMFEVDMGAEAIKKLLERLDLVKLSVDLRERLDKEVARGEKKSKQREKELVKRLKT
VEALRDSSNKCEWMVLECIPVIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLKKLV
DLNAPEVIIRNEKRMLQQSVDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLL
GKRVDYSARSVIVVGPELKLHQCGLPKKIALELFQPFIIRRLKELNHADTIKSAKKMLER
KDDVVWDILEEVTRSHPVMLNRAPTLHRMGIQAFEPVLIEGNAIRIHPLVCKGFNADFDG
DQMAVHLPLSIEAQVEATVLMMSTNNIFSPANGNPIITPSQDIVMGCYYLTASRGAEDEA
VEAGDGMVFHSPLELFRAHAEHKLGMHAKVRVRMPIEKKVISEVKDEKGNPRAEELPRKS
NGLVRTTVGRVIFNDILHPKMAFYDLPLSSKHLSRIIADCYQVLGRRETISLLDRMKETG
FRQATRSGLSFAASDLRTPDNKEGVLKDKDKEVEKVRKNFDRGIITETERYNKVIDLWME
ARDLITKKMMTDLRDDRRKDQVTGKEVPYLNPIYLMAHSGARGGIEQIRQLAGMRGLMAK
PSGAIIETPIKSNFREGLTVLEYFSSTHGARKGLADTALKTADSGYLTRKLADVAQNVVI
TMHDCGTTKGISKGVMYKGDEVDRSLSDAIRGRVSRNSIPNPTTGSEILAENEMITPGKA
KELEKIGIDKITVRSPMTCEAPLGVCRLCYGMDLATGSIVEDGMAVGIIAAQSIGEPGTQ
LTMRTFHIGGAAQSRGNVGDNEHKTKKGGIVQFERITVVTNDEGKNIALAPRTGEVVIIR
GKDIAERYGVPHGAELLVTEGQEVPATTALVRWDPHSVPLIAEESGIVRFKDIKEGVTVR
REIDRATGVERLTIMEHKGDLHPQIIVETGKGKDDRVYYIHERANLQVVNGQKVSAGSML
AKTPREVSQTQDITGGLPRVTELFEARRPRNPAVMAEVAGRVRIDPTRKRGKRIIEVIQE
TEDGKSLGSAREHLVPASAHVRVHPSEYVKEGDPLVHGPLVPHDILKIRGEQEVQEYLVR
EVQSVYRSQRVDIDDKHIEIIVAQMLRKVKVTRTGDTGLLPGAVMDKFAFDEVNRRLTEE
CVKVVNAGDTTLVAGRVYSREAFDEERVLIEKDKKKQQPTFTIPEQADREVQLLGITKAA
VQSDSFISAASFQETTKVLTEAALASKVDYLVGLKENVILGHLIPAGTGFKTHQEAEVKI
NVPGGGFPAPALTEADVPPAPESTGA
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgccgcgaacaacaacaagaacgccgacgcttccgagggcacgagctacgag
cggatcaacgacttcggggccgtgcgcatctcgctcgccagcccgcaggacatccactcg
tggtcccacggcgaggtgaagaagccggaaacgatcaactaccgcacgtaccggccggaa
aaggacgggctgttctgcgagaagatcttcgggccggaaaaggactgggagtgctcctgc
ggcaagtaccgcgggatgaagtacaagggcatgatctgtgaccggtgcggcgtgaaggtc
acgcactcgcgcgtgcgccgcaagcgcatggggcacatccagctcgccgcgcacgtggtc
cacatctggttcttcaaggccatgccgtcccgcctcgggacgctcctggacatgaagacc
acgaacctggaaaagatcatctacttccaggactacgtcgtcatcaacccgggcgacacc
gaggtcaccaagctcaaggagcgcgagctgctcaacgaggagcagtacaaggagaagcgc
ggcgagcacggcgacatgtttgaagtggacatgggcgccgaggcgatcaagaagctcctc
gagcgcctcgacctcgtgaagctctcggtggacctgcgcgagcgcctcgacaaggaagtg
gcgcgcggcgagaagaagtccaagcagcgcgagaaggaactggtcaagcgcctcaagacg
gtcgaggccctgcgcgacagctccaacaagtgcgagtggatggtgctcgagtgcatcccg
gtcatcccgccggacctgcggcccctcgtgctcctcgactcgggcaacttcgcgaccagc
gacctgaacgacctgtaccgccggatcatcaatcggaacaaccggctcaagaagctcgtc
gacctcaacgcgccggaagtcatcatccgcaacgagaagcggatgctccagcagtccgtg
gacgcgctgttcgacaacaaccggtgcaagcgcccggtgctcgggagcagcaaccgcccg
ctgaagtccctcacggacatgattaagggtaagcagggccggttccgcgagaacctgctc
ggcaagcgcgtcgactactccgcgcggtccgtgatcgtcgtcggcccggaactcaagctg
caccagtgcgggctcccgaagaagatcgcgctcgagctgttccagccgttcatcatccgg
cgcctcaaggagctgaaccacgcggacacgatcaagtccgcgaagaagatgctcgagcgc
aaggacgacgtggtgtgggacatcctcgaagaggtgacccggagccacccggtcatgctc
aaccgggcgccgacgctgcaccggatgggtatccaggcgttcgagccggtgctcatcgaa
gggaacgcgatccgcatccacccgctcgtctgtaagggcttcaacgccgacttcgacggc
gaccagatggccgtccacctgccgctctcgatcgaggcgcaggtcgaggcgaccgtgctg
atgatgtccacgaacaacatcttcagccccgcgaacgggaacccgatcatcacgccgtcc
caggacatcgtgatggggtgctactacctcaccgcgagccgcggggccgaggacgaggcg
gtcgaggccggcgacgggatggtgttccacagcccgctcgaactgttccgcgcgcacgcc
gagcacaagctcgggatgcacgcgaaggtccgcgtgcgcatgccgatcgagaagaaggtc
atcagcgaggtgaaggacgagaagggcaacccgcgggccgaggagctgccgcgcaagtcc
aacggcctcgtgcgcaccaccgtcggccgggtcatcttcaacgacatcctgcacccgaag
atggcgttctacgacctgccgctgtcgagcaagcacctgagccgcatcatcgcggactgc
taccaggtgctgggccggcgcgagaccatttcgctgctcgaccggatgaaggagaccggg
ttccgccaggccacccggagcggcctgtcgttcgccgcgagcgacctgcgcacgcccgac
aacaaggaaggcgtgctcaaggacaaggacaaggaagtcgagaaggtccgcaagaacttc
gaccgcgggatcatcaccgagaccgagcgctacaacaaggtgatcgacttgtggatggag
gcccgcgacctcatcaccaagaagatgatgacggacctccgggacgaccggcgcaaggac
caggtgacgggcaaggaggtgccgtacctcaacccgatttacctgatggcccactccggt
gcccgtggcggtatcgagcagatccgtcagttggccggtatgcgtggcctcatggccaag
ccgagcggggcgatcatcgagacgcccatcaagtcgaacttccgcgagggcctcacggtg
ctggagtacttctccagtacgcacggcgcgcgtaagggtctggccgacaccgcgctcaag
accgccgactccgggtacctcacccgcaagctggccgacgtcgcgcagaacgtggtcatc
acgatgcacgactgcgggacgacgaagggcatcagcaagggcgtgatgtacaagggcgac
gaggtggaccggtcgctgtcggacgcgatccgcgggcgcgtgagccgcaactcgatcccg
aacccgacgaccgggagcgagatcctcgccgagaacgagatgatcaccccggggaaggcg
aaggaactggagaagatcgggatcgacaagatcaccgtgcgcagccccatgacgtgcgag
gccccgctcggcgtgtgccggctgtgctacggcatggacctcgcgaccggctccatcgtc
gaggacgggatggcggtcgggatcatcgcggcccagtcgatcggtgaaccgggtacgcag
ctcacgatgcggacgttccacatcggtggtgcggcccagtcgcgcgggaacgtcggcgac
aacgagcacaagaccaagaagggcgggatcgtccagttcgagcggatcacggtcgtcacc
aacgacgagggcaagaacatcgccctcgccccgcgcaccggtgaggtcgtcatcatccgc
ggtaaggacatcgccgagcggtacggcgtgccgcacggggccgagttgctcgtgaccgag
gggcaagaggtgccggcgaccacggcgctggtgcggtgggacccgcactcggtgccgctc
atcgccgaagagtccgggatcgtccggttcaaggacatcaaggagggcgtgacggtgcgc
cgcgagatcgaccgcgccacgggcgtcgagcggctcaccatcatggagcacaagggcgac
ctgcacccgcagatcatcgtcgagaccgggaagggcaaggacgaccgggtgtactacatc
cacgagcgcgcgaacctgcaggtggtcaacggccagaaggtgtcggccgggtccatgctc
gcgaagacgccccgcgaagtgtcgcagacgcaggacatcaccggcggtctgccgcgggtg
acggagctgttcgaggcccggcgcccgcgcaaccccgcggtcatggccgaggtcgcgggc
cgggtgcgcattgacccgacccggaagcgcggcaagcgcatcatcgaggtcatccaggag
accgaggacgggaagtcgctcggctcggcccgcgagcacttggtcccggccagcgcgcac
gtccgggtccacccgagcgagtacgtgaaggagggcgacccgctcgtccacgggccgctc
gtcccgcacgacatcctgaagatccgcggcgagcaggaggtccaggagtacctggtccgc
gaggtgcagtcggtgtaccggtcccagcgcgtggacatcgacgacaagcacatcgagatc
atcgtcgcgcagatgctccgcaaggtgaaggtgacccgcaccggcgacacggggctcctg
cccggcgcggtgatggacaagttcgcgttcgacgaggtgaaccgccggctcaccgaggag
tgcgtgaaggtggtcaacgcgggcgacacgaccctggtcgccgggcgcgtgtacagtcgt
gaggcgttcgacgaagagcgggtgctgatcgagaaggacaagaagaagcagcagccgacc
ttcacgatccccgaacaggccgaccgcgaggtccagttgctcgggatcacgaaggccgcg
gtccagtcggacagttttatcagcgccgcgagcttccaggaaacgacgaaggtgctgacc
gaggccgcgctcgccagcaaggtcgactacctcgtcggcctgaaggagaacgtgatcctc
gggcacttgatcccggccggtaccgggttcaagacgcaccaggaggccgaggtcaagatc
aacgtcccgggcggcgggttcccggccccggcgctgaccgaggcggacgtgccgccggcc
ccggaatccacgggcgcgtga
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