Gemmata sp. SH-PL17: VT84_12875
Help
Entry
VT84_12875 CDS
T04358
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ges
Gemmata sp. SH-PL17
Pathway
ges03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ges00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VT84_12875 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ges03019
]
VT84_12875 (cshA)
03009 Ribosome biogenesis [BR:
ges03009
]
VT84_12875 (cshA)
Enzymes [BR:
ges01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VT84_12875 (cshA)
Messenger RNA biogenesis [BR:
ges03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VT84_12875 (cshA)
Ribosome biogenesis [BR:
ges03009
]
Prokaryotic type
rRNA helicases
VT84_12875 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
AMV25286
UniProt:
A0A142XEA5
LinkDB
All DBs
Position
3005749..3007308
Genome browser
AA seq
519 aa
AA seq
DB search
MIPPTDGDDWTVPESEQTHVPDEEPTSDEPVDAPPLDETATADDDFDDETDEAETDPASD
PDHESAPPPETDPAMVFADLKLMRPLMDAINAAGYKHPTPIQEAVIPPALRGKDVIGQAQ
TGTGKTAAFLIPFLNRWRPHKLKGPIGVVMTPTRELALQIANEAEKLAPSSQFRCVPVYG
GTGMQRQLTGLTRGCDLVVGTPGRMLDHLQRGSMSLAQVRYAVLDEADRMLDIGFRDDIE
RILKRCPTERQTLLMSATVPDSIKRLVNRYMKDPVHLHMTPSTPTVDKIRQSYFTVDADR
KFELLKRVIEREKPRQCLIFVERKRWADNLYRDLKRAVPKAAVIHGDLPQSQREKIMAAF
RTAEIKYLIATDVMSRGIDVSNLSHVINYDLPMDIENYVHRIGRTGRIGKDGIAISFALP
EQGEQLTNIEMMINRLIEADQIEGFESAAPRAKGPARDVKVIFTGLDSVKPVKPEGEDDG
WGDDDAPPARAPEEGTGASDEAAKKTVFGRRGKRYSQRL
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
ttgattcccccaactgacggggacgattggaccgttcccgaatccgaacaaactcacgtc
cccgacgaagagccgacttctgacgagccggttgacgcccctccactcgatgaaaccgcg
accgcggacgatgatttcgacgacgaaacggacgaagccgaaaccgatcccgcaagcgac
cccgatcacgaatccgccccgccgccggaaaccgatcccgcgatggtcttcgcggacctg
aaactgatgcgcccgctcatggacgccatcaacgcggccgggtacaagcacccgacgccg
attcaggaagcggtgattccgcccgccctgcgcggcaaagacgttatcgggcaggcgcaa
acggggaccggtaagacggccgcgttcctgatcccgttcctcaatcgctggcgccctcac
aaactcaaggggccgatcggtgtcgtgatgacgccgacgcgcgaactcgcgctccagatc
gcgaacgaggccgagaagctcgccccgagcagccagttccggtgcgtgccggtctacggc
ggcaccgggatgcagcggcaactgacgggactgactcgcgggtgcgacctggtggtcgga
acaccgggccggatgctcgaccatctgcaacgcggctcgatgtcgctggcgcaagtgcgc
tacgcggtgctcgacgaagcggaccggatgctcgacatcggcttccgcgacgacatcgag
cgcatcctgaagcggtgcccgaccgagcgccagacgctgctcatgtcggcgaccgtgccc
gattcgatcaagcgcctcgtgaaccggtacatgaaagacccggttcacctgcacatgacg
ccgagcacgccgaccgtggacaagatccgccagagctacttcacggtggacgcggaccgg
aagttcgagctgctgaagcgcgtcatcgagcgcgaaaagccgcgccagtgcctcatcttc
gtggagcgcaagcgctgggccgacaacctgtaccgcgacctcaagcgcgcggtgccgaag
gccgcggtgatccacggcgacctcccgcaatcgcagcgcgaaaagatcatggccgcgttc
cgcacggccgagatcaagtacctgatcgcgaccgacgtgatgagccgcgggatcgacgtc
tcgaacctgtcgcacgtcatcaactacgacctgccgatggacatcgagaactacgtccac
cggatcgggcgcaccgggcgcatcggtaaggacggcatcgcgatctcgttcgcgctaccg
gagcagggcgagcagctcaccaacatcgagatgatgattaaccggctcatcgaggcggac
cagatcgagggcttcgagtccgcggcgccgcgggcgaaggggccggcacgcgacgtgaaa
gtgatcttcaccgggttggattccgtgaagcccgtaaagcccgagggcgaagacgacggt
tggggtgacgacgacgcgcctccggcacgagcgccggaagagggcacgggggcgtcggac
gaggccgcgaagaagacggtcttcggtcggcgcggcaagcggtacagtcagcgcctctga
DBGET
integrated database retrieval system
