Gemmata sp. SH-PL17: VT84_18440
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Entry
VT84_18440 CDS
T04358
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
ges
Gemmata sp. SH-PL17
Pathway
ges03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ges00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VT84_18440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ges03021
]
VT84_18440
03019 Messenger RNA biogenesis [BR:
ges03019
]
VT84_18440
Transcription machinery [BR:
ges03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
VT84_18440
Messenger RNA biogenesis [BR:
ges03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VT84_18440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA_22
OB_RNB
Spore_III_AA
NACHT
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AMV26383
LinkDB
All DBs
Position
4282902..4284758
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AA seq
618 aa
AA seq
DB search
MSDTKPEVTKPARPTRSRTRKTAEPTAPAPVPPPPAPVANEVAEDEGFAAGIVDEVPATP
EPAPPAVTPPPAVIPPPPPAPEVRERRAEEVRERRTDARESTRSERGSRSERAPEPREAP
RAEVPPPAPRVEAPPVPRAERPLPPAPRTELPPPAPRAELPPVAPPALTPAPVRVDPNEQ
GFDAETNSRYEEIKRGNTYITELQHMTIAQLQKAAKDEGIPREEYVGLKKQDLVYRILRE
LTKANGLMFGEGTLEVLPDGFGFLRSPDYNYLPCPDDIYISPSQIRRFGLRTGAVVAGQT
RPPKENERYFALLRVEAINYAEPDLLTQKVVFDDLTPLHPERRLKLETSADELNTRVIDL
ITPIGKGQRGLIVAPPRTGKTVLLQKMANSIIQNHPECYVIVLLIDERPEEVTDMSRTVK
GPRVEVVSSTFDEPPERHVQVSEMVIEKAKRLVEYGTDVVILLDSITRLARAYNTVSPGS
GKLLSGGLDATALYKPKRFFGAARNIDEGGSLTILATALVDTGSKMDEVIFEEFKGTGNM
EVHLERRMVDRRVYPAINVNASGTRKEELLRGEDELRLVHIMHRILADMNPVEAMELLLK
QLSKYKTNAEFLTSVTLT
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatacgaagcccgaagtcaccaaacccgcgcgcccgacgcgcagtcgcacgcgg
aagaccgcggagccgaccgctccggcgccggttcccccgccccccgctccggtcgcgaac
gaggtcgcggaagacgagggattcgcggccggaatcgtggacgaagtgcccgcaacgccg
gaacccgcgccgcccgcggtaaccccaccccccgcggtcattccgcccccgcctcccgca
ccagaagtgcgcgagcgccgagcggaggaagtgcgcgagcgccggaccgatgcccgcgag
agcacccgctccgaacgcggcagtcgcagcgagcgtgctccggagccgcgagaagctccg
cgcgctgaagtgcccccgcccgcaccgcgggtagaggccccaccagtgccgcgcgcggag
cgtcctctgccgccggcccctcgcaccgaacttccgccgccggccccccgcgccgagttg
cccccggttgcgccgccggccctgaccccggcgcccgtgcgcgtggaccccaacgaacag
ggcttcgacgccgaaacgaactctcggtacgaggagatcaagcgcggcaacacgtacatc
accgaactgcaacacatgacgatcgcgcagttgcagaaggccgcgaaggacgaggggatt
ccgcgcgaagagtacgtcgggctgaagaagcaagacttggtgtaccgcatcctgcgcgaa
ctcaccaaggccaacgggctgatgttcggcgagggcacgctcgaagtgctcccggacggc
ttcgggttcctccgcagcccggattacaactacctcccgtgtccggatgatatctacatt
tcgccgtcgcagatccgccggttcgggttgcgcacgggggccgtcgtcgcgggccaaacg
cgcccgccgaaggagaacgagcggtacttcgcgctgctccgcgtggaggcgatcaactac
gccgaaccggacctgctcacgcagaaggtcgtgttcgacgatctcacgccgttgcacccc
gagcgccggttgaaactcgaaacgagcgcggacgaactcaacacccgcgtcatcgacctc
atcacgcccatcggtaaggggcagcgcgggctgatcgtcgccccgccgcgcaccgggaag
acggttctgctccagaagatggcgaactccatcatccagaaccacccggagtgctacgtc
atcgtgctcctgatcgacgagcgccccgaagaagtgaccgacatgagccggaccgtgaag
gggccgcgcgtggaggtcgtgtcgagcacgttcgacgagccgccggagcgccacgtccag
gtcagcgagatggtgatcgagaaggcgaagcgcctggtcgaatacggcaccgacgtggtc
atcctgctcgattcgatcacgcgcctggcgcgggcctacaacaccgtgtcgcccgggtcg
ggcaagttgctctccggtgggttggacgcgaccgcgctctacaagccgaagcggttcttc
ggcgcggcccgtaacatcgacgagggcgggtcgctcacgattctggcgaccgcgctggtg
gacaccggctcgaagatggacgaagtgatcttcgaggagttcaagggcacgggcaacatg
gaggtccatctcgagcggcggatggtggaccggcgcgtgtacccggcgatcaacgtgaac
gccagcggcacgcgcaaggaagaactgctgcgaggtgaggacgaactgcgcctcgttcac
atcatgcaccgcatcctggcggacatgaacccggtcgaggcgatggaactgctcctgaag
caactgagcaagtacaagaccaacgccgagttcctcaccagtgtgacgctcacgtga
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