Gemmata sp. SH-PL17: VT84_19240
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Entry
VT84_19240 CDS
T04358
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ges
Gemmata sp. SH-PL17
Brite
KEGG Orthology (KO) [BR:
ges00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ges03016
]
VT84_19240 (rnd)
Enzymes [BR:
ges01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
VT84_19240 (rnd)
Transfer RNA biogenesis [BR:
ges03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VT84_19240 (rnd)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AMV26543
UniProt:
A0A142XHP1
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Position
complement(4498872..4500101)
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AA seq
409 aa
AA seq
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MPRRPAKRPALPEQLVTHPAQLAACLAHLADMPLIGFDTEFVGEDAYRPELCLVQVSTAE
QLFVIDPFECGPLDEFWQILLDPERTVIVHAGREDVRMCYFQAGSAPPNVFDVQIAAGLV
GMTYPIGYAGLVHDLLHQRMQKGETLTDWRKRPLTPAQVRYAYDDVRYLLPAHRKLTERL
KRYKRLEWAEEEFATAVRKAVADDVTVERWRKIKGIGALDCRALAVAREVYGWRDKFAEK
LNRPPRFLMRDDLLIEIARRAPTKADELHAVRGLPRGQEEAILEAIRRAKALPTEECPEP
ETRDNDTSNVVLLGNLLNVVLADFAGRNRLAANLVSSGADLKTIVRSRAAGEPLPDVALC
RGWRAKAVLPELLAILSGDTAIRVADPKAAEPLELVELEPEDEEEPDEE
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgccccgccgcccggccaaacggcccgccctgccggaacaactcgttacgcacccggct
caactggccgcgtgcctcgcgcacctcgcggacatgccgctcatcggcttcgataccgag
ttcgtgggggaagatgcgtaccgcccggaattgtgcttggttcaggtctcgacggcagag
cagctcttcgtcatcgaccccttcgagtgcggcccgctcgacgagttctggcagatcctg
ctcgaccccgagcggaccgtgatcgtccacgcggggcgcgaagacgtgcgcatgtgctac
tttcaagcgggcagtgcgccgccgaacgtgttcgacgtgcaaattgccgcgggattggtg
ggaatgacgtaccccattgggtacgcggggctcgttcacgacctgctgcaccagcggatg
cagaagggtgagacgctcaccgactggcgcaagcgcccgctcaccccggcccaggtgcgg
tacgcctacgacgacgtgcgctacctgctccccgcacaccggaagctcacggagcggttg
aagcggtacaagagacttgagtgggcagaggaagaattcgccaccgcggtccggaaagcg
gtcgcggacgacgtcacggtcgaaaggtggcgaaaaatcaaaggtatcggcgcattagat
tgccgcgcacttgcggtcgcgcgcgaggtttacggttggcgcgataagttcgcggagaaa
ctgaatcgcccgccgcgattcctgatgcgggacgatttactcattgagatcgcgcggcgc
gctcctacaaaggccgacgagttgcacgcggtccgcgggcttccacgcgggcaggaggag
gcgattctcgaagcgatccggcgcgcgaaggcgctgcccaccgaggagtgcccggaaccg
gaaacgcgcgacaacgatacctcgaacgtcgtgctgttggggaacctcctaaacgtggtt
ctcgccgatttcgccgggcggaaccgattggccgcgaacctcgtctcatcgggggcggac
ctgaaaacgatcgttcgcagccgcgccgcgggcgagccgctacccgacgtcgcgctgtgc
cgcgggtggcgcgcaaaagcggtgctcccggaactgcttgcgatcctgtccggcgacacg
gcgattcgcgtcgcggacccgaaggccgcggagccgctggaattggtcgaactggagcca
gaggatgaggaagaaccggacgaagaatga
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