Gemmata sp. SH-PL17: VT84_20135
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Entry
VT84_20135 CDS
T04358
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ges
Gemmata sp. SH-PL17
Pathway
ges03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ges00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VT84_20135 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ges03019
]
VT84_20135 (deaD)
03009 Ribosome biogenesis [BR:
ges03009
]
VT84_20135 (deaD)
Enzymes [BR:
ges01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VT84_20135 (deaD)
Messenger RNA biogenesis [BR:
ges03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VT84_20135 (deaD)
Ribosome biogenesis [BR:
ges03009
]
Prokaryotic type
rRNA helicases
VT84_20135 (deaD)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AMV26720
UniProt:
A0A142XJS8
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All DBs
Position
complement(4713254..4714936)
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AA seq
560 aa
AA seq
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MVETMAETTATVTVSGFANLGLDNRLVDALSGLGYEEPTPIQREAIPPLIEGRDVIGQAA
TGTGKTAAFSLPLIHRLSTLTVRTRPTALILVPTRELAMQVAESVERYGKPLGIRVLAMY
GGTGMDTQFRALHRGVDVVVATPGRALDHLRRGSLVLSEIAAVVLDEADEMLDMGFAEDI
EALITATPATRQTVLFSATMAPRIRAIAGRHLTNAVEIVIARAPVAAGAAPRVRQTAYLV
PRAHKLAALGRVLDVEAPKAALIFCKTRSEVDQLTEALAARGYRPEALHGGMSQDQRDRV
MRLFRSGQANLLVATDVAARGLDVDHLTHVVNYQLPLGTEAYVHRIGRVGRAGREGVALT
VAEPREQSALRAIERVTGQRVEFARVPTAADLKARRAERTKDAIRATIAEGELDQFRTIV
ESLGSEFDPTAIALAALKLAHRAEIGDTADEPDIPTTVPEQSRTPFRARGQQQHQTRSPG
PRLARIFISAGRESGIAPRDLVGAIANESGLPGRDIRGIEITDRFSIVEVPEDAAEHVIE
SLNGARLRGRRVSARRDRRE
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggtcgagacgatggcagaaacgacggcgacagtgacggtatcggggttcgcgaacttg
ggtttggacaatcgcctcgttgatgcactatccggtctcggctacgaagagccgaccccc
attcagcgcgaagcgattccgccactgatcgagggccgcgacgtcatcggccaggcggcg
acgggcaccgggaagaccgccgcgttttcactcccactgatccaccgcctttcgaccctc
actgttcgtacccgccccactgctctgattctggttcccacgcgcgaactggcgatgcag
gtcgcggaatcggtcgagcgctacggtaagccgctcgggattcgcgttctggcgatgtac
ggcggcaccgggatggacacgcagttccgcgcgctgcaccgcggtgttgacgtggtcgtc
gcgacgccggggcgggcgctcgatcacctgcgacgcggatcgctcgtactcagcgaaatc
gcggccgtggtgctggacgaagccgacgaaatgctcgacatggggttcgccgaggacatt
gaggcgctcatcaccgcgaccccggcgacccggcaaacggtgctgttctccgcgacgatg
gccccgcgcatccgggccattgcgggccggcacctgacgaacgcggtcgaaatcgtgatc
gcgcgtgccccggtcgcggccggagccgctccgcgtgtgcgccagacggcgtacctcgtt
ccgcgtgcgcacaagctggctgctcttggtcgcgtgctcgatgttgaagcaccgaaggcc
gctctgatcttctgcaagacgcggtcggaagtcgaccaactcaccgaagcgctggccgca
cgcgggtaccgccccgaagcgctgcacggcgggatgtcacaggaccagcgcgaccgcgtg
atgcggttattccggtcgggtcaggcgaacctgctcgtggcgaccgacgtggccgcacgg
gggctggacgtcgatcacctcacgcacgtcgtcaactaccagttgccgctcggaaccgag
gcttacgttcaccggatcgggcgcgtgggccgggccgggcgcgagggtgtggccctcacc
gtggccgaaccgcgtgagcaatcggcgctgcgagccatcgagcgcgtgaccggtcagcgg
gtcgagttcgcacgagtgcccacggccgcggacctcaaggcgcgtcgggcggaacgcacg
aaagacgcaatccgcgcgacaatcgcggaaggcgaactcgaccagttccgcacgatcgtt
gagtcgctgggcagcgagttcgatccgacggccatcgcgctggccgcattgaagctggct
caccgcgcggaaatcggcgacaccgcggacgaacccgacatccccaccaccgtgccggaa
cagtcgcgcacgccgttccgcgcacgcgggcaacagcagcaccagacgcgctcgcccggt
ccgcgcctggctcgcatcttcatcagtgcgggccgcgagtccgggatcgcgccgcgcgac
ctggttggcgcgatcgccaacgagtcgggcctcccggggcgcgacatccgcgggatcgaa
atcaccgaccgcttctccatcgtggaagtgcccgaagacgcggccgagcacgtaatcgaa
tcgctgaacggcgcccgcttgcggggccgccgcgtcagcgctcgccgcgatcgccgcgaa
tga
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