Gemmata sp. SH-PL17: VT84_20705
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Entry
VT84_20705 CDS
T04358
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ges
Gemmata sp. SH-PL17
Brite
KEGG Orthology (KO) [BR:
ges00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ges03016
]
VT84_20705 (rtcB_1)
Enzymes [BR:
ges01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
VT84_20705 (rtcB_1)
Transfer RNA biogenesis [BR:
ges03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
VT84_20705 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
VT84_20705 (rtcB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AMV26833
LinkDB
All DBs
Position
4850846..4852306
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AA seq
486 aa
AA seq
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MKSEFAGPLESIGCCCHRIPKSYKAGMRVDGHIYANDKLLEAIRKDQAPDQVANVAMLPG
IQVASIAMPDIHWGYGFCIGGVCATDPEEGGVISPGGVGYDINCGVRFIKTNLYLDDVKH
HMKELVKALFYTVPSGAGRTGRYKFDATETRRLMGEGPRFVIDRGLGVARDLDHTEANGR
IDDADPHQVSDHAVKRGAEQCGTLGSGNHFLEVQVVDSVFDADVAKVFGLELNQVCVMIH
SGSRGLGYQVCDDSLAAFRNCPTKYGFELPDRQLACAPVDSPEGRKYIAAMRAAANYGFC
NRQLLMQQAREVFAGVFGRSWEDLGMEQLYDVAHNIAKLEEHTVDGKKKKVWVHRKGATR
AFPAGHPEVPEKYRAVGQPVIIPGDMGRASWVLVGSQGAMEKTFGTTCHGAGRAMSRTAA
LKDGAGRKIDRELEHRGVIAMASSRNGLAEEQPKAYKNVDDVVDVVHEADLSRRVARMRP
LGVIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaagagtgaatttgccggcccgctggaaagtatcggctgttgctgccaccgcatccca
aagagctacaaggcggggatgcgcgtggacgggcacatctacgcgaacgacaagctcctg
gaagccatccgcaaggaccaggcgccggaccaggtcgcgaacgtggcgatgctcccgggc
atccaggtcgcgagcatcgcgatgccggacatccactggggctacgggttctgcatcggc
ggcgtctgcgcgaccgatccggaagagggcggcgtcatttcgcccggcggcgtcgggtac
gacatcaattgcggcgtccggttcatcaagaccaatctctatctcgatgacgtcaagcac
cacatgaaggaactggtgaaggcgctgttctacaccgttccgagtggggccgggcgcacc
gggcgctacaagttcgacgccaccgagacgcgccggctgatgggcgaaggcccgcgcttc
gtgatcgaccgcggactgggcgtggcgcgcgacctcgaccacaccgaggcgaacggccgt
atcgacgacgcggacccgcaccaggtctccgaccacgcggtgaagcgcggcgcggaacag
tgcggcacgctcggcagcgggaaccacttcctcgaggtgcaggtcgttgacagcgtcttc
gacgcggacgttgcgaaggtgttcggcctggaactgaaccaggtgtgcgtgatgatccac
tcggggagccgcgggctgggctaccaggtgtgcgacgactcgctcgccgcgttccgcaac
tgcccgacgaagtacggcttcgagttacccgaccgacagctcgcgtgcgccccggtcgat
tcgcccgagggccgcaagtacatcgccgcgatgcgggccgcggcgaactacgggttctgc
aaccgtcagctcctcatgcagcaggcgcgcgaggtgttcgcgggcgtcttcggccggtcg
tgggaagacctcggcatggagcaactctacgacgtcgcgcacaacatcgcgaagctcgaa
gagcacacggtggacgggaagaaaaagaaggtctgggtccaccgcaagggcgcgacgcgg
gcattcccagccggccacccggaggtgcccgagaagtaccgcgccgtcggccaaccggtg
attatccccggcgacatgggccgcgcgtcgtgggtgctggtcggttcgcagggcgcgatg
gagaaaaccttcggcaccacgtgccacggggccgggcgcgcgatgagccgcaccgcagcg
ctcaaggacggggcggggcggaagatcgatcgcgaactcgaacaccggggcgtaatcgcg
atggcgagcagccgcaacgggctcgcggaggaacaaccgaaggcgtacaagaacgtggac
gatgtggtggacgtcgtccacgaagccgatttgtcgcgccgcgtcgcgcggatgcggccc
ctcggcgtgattaagggctga
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