Gemmata sp. SH-PL17: VT84_24865
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Entry
VT84_24865 CDS
T04358
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ges
Gemmata sp. SH-PL17
Pathway
ges03410
Base excision repair
ges03430
Mismatch repair
ges03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ges00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VT84_24865 (recJ)
03430 Mismatch repair
VT84_24865 (recJ)
03440 Homologous recombination
VT84_24865 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ges03400
]
VT84_24865 (recJ)
DNA repair and recombination proteins [BR:
ges03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
VT84_24865 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
VT84_24865 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VT84_24865 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AMV27656
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Position
5834961..5836739
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AA seq
592 aa
AA seq
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MARAEKQWHLLPSDPTATNRLAGSARVSSVVAQLLINRGVRDAAAARRFLDTPLGGLLPP
MALPGVRDAADRIARAITDKRRICIYGDYDVDGVTGTSVLLRVLNKLGADVQFHVPLRLS
EGYGLNGERLRELQRAGVSMVVSVDCGIASLAEAQVAREIGLELIVTDHHEMKMGLDGPI
LPLASVLVHPRLPAPEPYPFGDLSGAGVAFKLAWAVAQRATGSERVPADLREILLDAVGL
AALGLVADVVPLRDENRIFVRHGLERIRTNPSVGLKALLDASGVKPDQVLTSEDVGFKLA
PRLNAAGRLGCASFAVELLTTTSITKAVQLAQQLEALNSDRQSHERKYTQAAKEMVEEQF
ADDPAIVVGSEDWHPGVIGIVASRLVDYFGKPALVIAMQPNEPIATGSGRSVTGFALHTA
LVACDDILEGHGGHAAAAGLKVRPERIPALRERFNAYVTGHYPGGAPAQQLTLDAEVPLS
AITFGLLKDLDKLEPYGAANPKPKFLAAGLKVEGARLIGTGEVQRHMDFRVRQGETTIRC
VAWGMADRLEELMSANGDCCLAFTPKINEWKGYKKIELQVIDLKPGKTVPLV
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcgtgcagaaaagcagtggcacttgctcccgtccgacccaaccgcgaccaaccgg
ctcgcggggtcggcgcgggtgtcgtcggtcgtggcccaactcctcatcaaccgcggcgtg
cgcgacgcggcggcggcccgccggttcctcgatacgccgctcggggggctactcccgccg
atggcgctacccggcgtgcgcgacgcggcggatcgcatcgcccgcgcgatcaccgacaag
cggcgcatctgcatctacggcgattacgacgtggacggcgtgaccggcacgtccgtgcta
ctccgcgttctcaacaaactcggcgcagacgtgcagttccacgtgcccctgcgcctgtcc
gaggggtacgggctgaacggcgagcggctccgcgaacttcagcgcgcgggcgtctcgatg
gtggtgagcgtggattgcgggatcgcgagccttgcggaagcacaagtggcgcgcgaaatc
gggctggaactgatcgtcaccgaccaccacgaaatgaagatggggctagatggcccgatc
ctcccactagcatcggtgctcgttcacccgcgattgccggcccccgagccgtacccgttc
ggtgacctgtccggcgccggggtcgcgttcaagttggcgtgggcggtcgcacaacgcgcc
accgggtcggaacgagtgcccgcggacctgcgcgagatccttctcgacgcggtcgggctg
gcggccctcggtctggtcgcggacgtcgttccgcttcgcgacgagaaccggatcttcgtg
cgccacggactagaacgcatccgcacgaacccctccgtggggcttaaagcacttctcgac
gccagtggcgtgaaaccggaccaggtgctgacgtccgaggacgtcgggttcaaactcgcc
ccccgcttgaacgcggccggacggttgggttgcgcgagttttgccgtggaactgctgacg
actacctcaatcaccaaggccgttcaactggcgcagcagctcgaagcgctgaacagtgac
cgacaatcgcacgagcgcaaatacacccaggccgcgaaggaaatggtcgaggagcagttc
gcggacgacccggccatcgtggtcgggtccgaggactggcacccgggcgtgatcgggatt
gtggcaagtcgactggtggactactttggcaaaccggcgctggtgatcgcgatgcagccg
aacgaacccattgccaccggttccgggcggagcgttaccgggttcgcactacacacagcg
ctcgtggcgtgcgacgacatactcgaagggcacgggggccacgcggccgcggccggtctt
aaagtgcgcccggagcgcatcccggcactgcgcgagcggttcaacgcttacgtcacgggc
cattaccccggcggcgcgccggcgcagcaactcacgctcgacgccgaggtgcccctttcg
gccatcacgttcgggctgctaaaagacctcgacaaattggaaccttacggcgccgcgaac
ccgaagccgaagttcctcgcggccgggctaaaggtagaaggcgcgcgtctcatcgggaca
ggcgaggtccagcgccacatggacttccgcgtgcgccagggcgaaacgacgatccgctgc
gtcgcgtggggtatggccgaccgtttggaagaactgatgagcgcgaacggcgactgttgc
ctggctttcacgcccaaaatcaacgagtggaagggttacaagaagatcgagcttcaggtg
atcgacctgaagcccgggaaaacggtgccactggtgtga
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