Gemmata sp. SH-PL17: VT84_26665
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Entry
VT84_26665 CDS
T04358
Symbol
ihfB
Name
(GenBank) Integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
ges
Gemmata sp. SH-PL17
Brite
KEGG Orthology (KO) [BR:
ges00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ges03032
]
VT84_26665 (ihfB)
03036 Chromosome and associated proteins [BR:
ges03036
]
VT84_26665 (ihfB)
03400 DNA repair and recombination proteins [BR:
ges03400
]
VT84_26665 (ihfB)
DNA replication proteins [BR:
ges03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
VT84_26665 (ihfB)
Chromosome and associated proteins [BR:
ges03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
VT84_26665 (ihfB)
DNA repair and recombination proteins [BR:
ges03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
VT84_26665 (ihfB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
Motif
Other DBs
NCBI-ProteinID:
AMV28016
UniProt:
A0A142XM48
LinkDB
All DBs
Position
complement(6284107..6284634)
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AA seq
175 aa
AA seq
DB search
MTKKEIVKTICDRANHEKLIPKHSLTQLATKEIVQWTFEAIIATLVQEGRIELRNFGVFE
VKQRRPRKARNPRTGDPVNVEAKNVVTFQPGKMMEEQVKKSTKIAEVKKKKPRKSKADKA
AARSAEPKTAPAPIAEPSANGNGTVPTETASVPAVVSTVTKSAVEPVTSDAPAAT
NT seq
528 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaagaaagaaatcgtcaagacgatctgcgaccgggctaaccacgaaaagctcatt
ccgaagcacagcctcacgcagctcgccacaaaggaaatcgtgcaatggaccttcgaggcg
attatcgccacgctggtccaggaggggcgcattgaactgcgcaacttcggcgtatttgaa
gtcaagcagcgcaggccgcgcaaggcgcgcaacccgcgcacgggtgaccccgtcaacgtc
gaggcgaagaacgtggtaacgttccagcccggcaaaatgatggaagaacaggtcaagaag
tccacgaagatcgcggaagtgaagaagaagaagccgcgcaaatcgaaggcggacaaggcc
gctgcgaggagcgcggagccgaagacggctcccgcaccgatcgccgaaccctcggccaac
ggtaacggtacggtcccgacggaaaccgcgagcgtacccgcggtcgtcagcaccgtgacg
aagtccgcggtcgagccggtgacgtcggacgccccggccgcgacctga
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