Gemmata sp. SH-PL17: VT84_27585
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Entry
VT84_27585 CDS
T04358
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
ges
Gemmata sp. SH-PL17
Pathway
ges03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ges00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VT84_27585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ges03021
]
VT84_27585
03019 Messenger RNA biogenesis [BR:
ges03019
]
VT84_27585
Transcription machinery [BR:
ges03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
VT84_27585
Messenger RNA biogenesis [BR:
ges03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VT84_27585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
ResIII
AAA_25
Mor
AAA_14
OB_RNB
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AMV28200
LinkDB
All DBs
Position
complement(6499062..6500537)
Genome browser
AA seq
491 aa
AA seq
DB search
MPDAKGVEGSPLPRPSLLRAAAAKRPFRKPTDGPAGPATGAPPAPAPVAPPPERVERERP
ERVERPRPVHTGSRLDDLYRMPMPELFALAEKEGIREHTGMSRAQLIVGVVRRQIERGEV
VRGSGTLEVLPDGYGFLRSQAHNYLASPEDIYVSPSQIRRMSLRTGLVVEGPIRLPIENQ
DNFALMQIELVNNKHPDEGTGVTSFEDLTPLHPNERLRLESAPDELSMRIVDLITPVGKG
QRGLIVAPPRTGKTILLAKMANAIIRNHPESYVFVLLVDERPEEVTEMQRLVNSPNAEVV
ASTFDEPPEEHIHVSEIVLEKAKRMVEMKKDVIILLDSITRLARAHNTEAPGGGKLLSGG
LDSNAMQKPKRFFGAARNVEEGGSLTILATALVDTGSRMDEVIFEEFKGTGNSELHLDRR
LVEKRVYPAIDAVKSGTRKEELLMHPEEYDKVRILRRVLADMHPVEAMEMLLNKSRKTKS
NMEFLLSMNLG
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacgccaagggcgtcgaagggtcgccactgccgcgcccctcacttctccgtgcc
gcagccgccaagcggcccttccgcaagccgaccgatggccccgctggtcccgctaccggc
gccccgccggccccggcccccgttgctccgccccccgagcgcgtcgagcgcgagcggccc
gagcgcgtcgaacggccgcgccccgtccacaccggctcccgcctcgacgatctctaccgc
atgccgatgccggaactcttcgcgctcgcggagaaagagggcatccgcgagcacaccggg
atgagccgggcgcaactcatcgtcggcgtcgtgcgccggcagatcgagcgcggcgaagtg
gtccgcgggtccggcacgctggaagttctgcccgacggctacgggttcctccgcagccag
gcgcacaactacctcgccagcccggaagacatctacgtttcgccgtcgcagatccgccgc
atgagcctccgcaccgggctcgtagtggaaggcccgatccggctcccgatcgagaaccag
gacaacttcgccctgatgcagatcgagctggtgaacaacaagcaccccgacgaggggacg
ggcgtcaccagctttgaagacctcacgccgctgcacccgaacgagcgcctccggctcgag
agcgcgcccgacgagctctcgatgcggatcgtggacctcatcacccccgtgggcaagggc
cagcgcgggctgatcgtcgccccgccgcggaccgggaagaccatcctgctcgcgaagatg
gccaacgcgatcatccgcaaccaccccgagtcctacgtgttcgtgctgctcgtggacgag
cgcccggaagaagtgaccgaaatgcagcggctggtgaacagcccgaacgccgaggtggtc
gcgagcaccttcgacgagccgccggaagaacacatccacgtctccgagatcgtgctggag
aaggccaagcggatggtggagatgaagaaggacgtcatcatccttctcgactcgatcacg
cggttggcccgcgcccacaacaccgaggccccgggcggcgggaagctgctctccggtggt
ctcgactccaacgcgatgcagaagccgaagcggttcttcggtgccgcgcgtaacgtcgaa
gagggcggttctctcaccatcctggcgacggcgctggtggacaccggctcgcgcatggac
gaggtgatcttcgaggagttcaagggcacgggtaacagcgagctccacctcgaccgccgg
ctcgtcgagaagcgggtttatcccgccatcgacgcggtgaagagcgggacgcgaaaggaa
gagctcctgatgcacccggaggagtacgacaaggtgcgcatcctgcgccgcgtgctggcc
gacatgcacccggtggaagcgatggaaatgctcctgaacaagtcgcggaagacgaagtcc
aacatggagttcctcctctcgatgaacctgggctaa
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