Gemmata sp. SH-PL17: VT84_31320
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Entry
VT84_31320 CDS
T04358
Symbol
hup
Name
(GenBank) DNA-binding protein HU
KO
K05788
integration host factor subunit beta
Organism
ges
Gemmata sp. SH-PL17
Brite
KEGG Orthology (KO) [BR:
ges00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ges03032
]
VT84_31320 (hup)
03036 Chromosome and associated proteins [BR:
ges03036
]
VT84_31320 (hup)
03400 DNA repair and recombination proteins [BR:
ges03400
]
VT84_31320 (hup)
DNA replication proteins [BR:
ges03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
VT84_31320 (hup)
Chromosome and associated proteins [BR:
ges03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
VT84_31320 (hup)
DNA repair and recombination proteins [BR:
ges03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
VT84_31320 (hup)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
LigT_PEase
STAS_2
HU-HIG
Motif
Other DBs
NCBI-ProteinID:
AMV28926
UniProt:
A0A142XPM9
LinkDB
All DBs
Position
complement(7333069..7333335)
Genome browser
AA seq
88 aa
AA seq
DB search
MTTPQLTGTVDPENVARVFDAVAEVLFKHGRVEIDGFGTFELQMRKARRGRNPRTGDWID
VPAKVTVKFKPAGSLKRRAEQLPDVPGA
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
gtgactacacctcaactgaccgggactgttgatcccgaaaatgtcgcgcgcgtcttcgat
gcagttgccgaggtgttgttcaaacacgggcgcgtggaaattgatggtttcggcacgttc
gagttacaaatgcgcaaggcacgcagagggcggaacccgcgaacgggggactggatcgac
gttcccgctaaggtgaccgtgaagttcaagccggctggttcgctgaagcgccgagcagag
caacttcccgacgtgccgggggcgtga
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integrated database retrieval system
