Geothrix sp. L227-G1: QOZ81_000542
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Entry
QOZ81_000542 CDS
T09988
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
get
Geothrix sp. L227-G1
Pathway
get03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
get00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
QOZ81_000542
09124 Replication and repair
03420 Nucleotide excision repair
QOZ81_000542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
get03021
]
QOZ81_000542
03400 DNA repair and recombination proteins [BR:
get03400
]
QOZ81_000542
Enzymes [BR:
get01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QOZ81_000542
Transcription machinery [BR:
get03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
QOZ81_000542
DNA repair and recombination proteins [BR:
get03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
QOZ81_000542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
DEAD
Motif
Other DBs
NCBI-ProteinID:
WIL21288
LinkDB
All DBs
Position
616260..618005
Genome browser
AA seq
581 aa
AA seq
DB search
MIALRPDNPLIVQSDRTLLLEVAHPAFEQVRDELARFAELVKSPEHIHTYRITPLSLWNA
SASGVSCTDMIETLNTWSKYPVPQNLLQEIEDHGTRYGKLRLVAKGDRLALEMDDRGLFW
ELENQKSLQGLLAEPYPDEKGIYLNTGMRGEVKLQLIRLGHPVQDMAGYKPGDPLPFELS
PTTLQNGKPFGLRPYQQAAADVFHAGGGPDGGAGVLVLPCGAGKTVIGIGCMASLQTHTL
VLTTNGTAVKQWKQELLDKTTLTEDQVGLYTGDTKEIKPVTIATYQILTYRRSKTGPFEH
FKLFEAANWGLVIYDEVHMLPAPVFRAVAELQAKRRLGLTATLVREDGKEEDVFSLIGPK
RVDVPWKMLEKDGFIATAHCLEIRVPLPTDERMEYAVADQRQRFRIASENSLKMVVMDEL
LAGHPTDNILIIGQYLEQLRIIGERLNAPVLTGQTPEKERESLFRQFREGQLRVLIVSKV
ANFAIDLPDASVAIQVSGTFGSRQEEAQRLGRILRPKGERNVSYFYSLISSETTEQEFAR
NRQLFLTEQGYRYLIESRRFDEHRRLSEPSVWKQLLEETRI
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgccctccgccccgacaaccccctgatcgtccagagcgatcgcaccctgctgctc
gaggtcgcccacccggcgttcgagcaggtgcgggacgagctggcgcgcttcgcggagctg
gtgaagagccccgagcacatccacacctaccgcatcacgccgctgagcctgtggaacgct
tccgcctcgggcgtcagctgcacggacatgatcgagaccctcaacacctggtcgaagtac
ccggtgccgcagaacctgctgcaggagatcgaggaccacggcacccgctacggcaagctg
cgcctggtggccaagggcgaccggctggccctggagatggatgatcgcggcctcttctgg
gagctggagaaccagaaatccctgcagggcctgctggcggaaccctaccccgacgagaag
ggcatctacctcaatacgggcatgcggggcgaggtgaagctccaactgatccgcctgggc
cacccggtgcaggacatggccggctacaagcccggcgatccgctgcccttcgagctgtcg
cccaccacgctccagaacggcaagcccttcggcctgcggccctaccagcaggcggcggcg
gacgtcttccacgcgggcggtgggcctgatggcggcgccggggtgctggttctgccctgc
ggcgcgggcaagaccgtcatcggcatcggctgcatggccagcctgcagacgcacacgctg
gtgctcaccaccaacggcaccgccgtgaagcagtggaagcaggagctgctggacaagacc
acgctgacggaagaccaggtgggcctctacacgggcgacaccaaggagatcaagccggtc
accatcgccacctaccagatcctcacctaccgccgcagcaagaccggtcccttcgagcac
ttcaagctcttcgaggccgccaactggggcctggtgatctacgacgaagtgcacatgctg
ccggcgccggtgttccgggccgtggccgagctgcaggccaagcgccgcctgggcctcacg
gccacgttggtgcgcgaggacggcaaggaggaggacgtcttcagtctcatcggccccaag
cgggtggacgtgccctggaagatgctggagaaggacggcttcatcgccacggcccactgc
ctggagatccgcgtccccctgcccacggacgagcgcatggagtacgccgtggccgaccag
cgccagcgcttccgcatcgcctccgagaacagcctgaagatggtggtgatggatgagctg
ctggcgggccatcccaccgacaacatcctcatcatcggccagtacctcgagcagctccgc
atcatcggggagcggctcaacgccccggtactcacggggcagacgccggagaaggagcgg
gaatcgctcttccggcagttccgtgagggccagctgcgggtgctcatcgtgagcaaggtg
gccaacttcgccatcgacctgccggacgcctccgtagccatccaggtgagcggcaccttc
ggctcgcggcaggaggaggcccagcgcctgggccgcatcctgcgccccaagggcgagcgc
aacgtgagctacttctactcgctcatcagcagcgagaccacggagcaggagttcgcccgc
aaccgccagctcttcctcaccgagcagggctaccgctacctcatcgaaagccgccgcttc
gacgagcaccgccggctcagcgaacccagcgtgtggaagcagctgctggaggaaaccagg
atctga
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