Geothrix sp. L227-G1: QOZ81_000818
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Entry
QOZ81_000818 CDS
T09988
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
get
Geothrix sp. L227-G1
Pathway
get03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
get00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QOZ81_000818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
get03019
]
QOZ81_000818
03400 DNA repair and recombination proteins [BR:
get03400
]
QOZ81_000818
Enzymes [BR:
get01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QOZ81_000818
Messenger RNA biogenesis [BR:
get03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QOZ81_000818
DNA repair and recombination proteins [BR:
get03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
QOZ81_000818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
HHH
Motif
Other DBs
NCBI-ProteinID:
WIL21554
LinkDB
All DBs
Position
complement(923928..925556)
Genome browser
AA seq
542 aa
AA seq
DB search
MECREGLRSLRARYKTEPTAFDTEAIAALKRLASDLEASPDLESALKATFGYDAFRPGQR
TIIEAVLSGRDVVGIMPTGAGKSLTYQLPARLLGGVTLVVSPLIALMKDQVDALTEAGLR
ATFLNSSLDAEARRERIRALKNGELELVYAAPEGLELYLADLLREVDLRLIAVDEAHCIS
HWGHDFRPAYRTLAGLKQRFPEVPVLALTATATPEVRRDIAAQLEMRNPVEVQGSFFRSN
LRISAYRKGAEGLPPVREALLRLVLARRGDSGIIYCLSRKAVEATAAFLSGEGIRATAYH
AGMDPTARSAAQEAFQRDDVDVIVATVAFGMGIDKSNIRYVIHRDMPKSVEGWYQEIGRA
GRDGADADCVMFYGWGDVLSYDRFTDGLEASLAQAQQRQTRDLFRLAEATFCRHQALLAH
FGERMDACGSSCDVCSGDDPLRTAPSPGKAKRGSPRGSRPPLTEAPVEGEEALYRELKAL
RKRLADAKGVPAYVIFSDATLQQMARFQPATEAEFLALSGVGPKKLQQYGASFLDLLGRQ
GS
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
gtggaatgccgggaagggctgcggagcctccgggcccgctacaagaccgagcccacggcc
ttcgacacggaggccatcgccgcgctgaaacgcctggcctcggacctggaggcgtcccct
gacctggaatcggccctcaaggccaccttcggctacgacgccttccgtccgggccagcgc
accatcatcgaggccgtcctctcgggccgcgacgtggtgggcatcatgcccaccggagcc
gggaagtccctcacctaccagctgcccgcgcggctgctgggcggcgtgacgctcgtggtc
tcccccctcatcgcgctcatgaaggatcaggtcgatgccctcacggaagccggactccgc
gccaccttcctgaactccagcctggacgccgaggcccggcgcgagcgcattcgcgccctg
aagaacggcgagctggagctggtctacgccgcgccagagggcctcgagctctacctggcc
gacctgctgcgcgaggtggacctgcgcctcatcgccgtggacgaggcccactgcatcagc
cactgggggcacgatttccgccccgcctaccggaccctcgccggcctgaagcagcgcttc
ccggaggtgcccgtgctggccctcacggccaccgccacgcccgaagtccgccgcgacatc
gccgcccagctggagatgcggaaccccgtggaggtgcagggttccttcttccgatccaac
ctccgcatcagcgcctaccgcaaaggggcggaaggcctgcccccggtgcgtgaagcgctg
ctgcgcctcgtcctggcccggcgcggggacagcggcatcatctactgcctgtcgcggaag
gcggtggaggccaccgcggccttcctctccggcgagggcatccgcgcgaccgcctaccat
gcgggcatggaccccacggcccgctccgcggcccaggaggcgttccagcgcgacgacgtg
gacgtcatcgtggccacggtcgccttcggcatgggcatcgacaagagcaacatccgctac
gtcatccaccgcgacatgcccaagagcgtggagggctggtaccaggagatcggccgcgca
ggccgcgacggggccgatgccgactgcgtgatgttctacggctggggcgacgtgctcagc
tatgaccggttcacggacggcctggaggcctccctggcccaggcccagcagcggcagacc
cgggacctcttccgcctcgccgaggccacgttctgccggcatcaggccctgctcgcccac
ttcggcgagcggatggatgcctgcgggtcctcctgcgacgtctgcagcggcgacgacccg
ctgcgaaccgcgccttcccccggcaaggccaagcgcggctcgccgcgcggctcccggccc
ccgctcacggaggcgccggtggagggcgaagaggcactctaccgggagctgaaggccctg
cggaaacgcctggccgatgccaagggcgtgcccgcctacgtgatcttcagtgacgccacc
ctccagcagatggcgcgcttccagcccgccacggaggccgaattcttagccctcagcggc
gtggggccgaagaagcttcagcagtacggggcttccttcctcgacctgctcggtcggcaa
ggttcctga
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