Geothrix sp. L227-G1: QOZ81_001921
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Entry
QOZ81_001921 CDS
T09988
Name
(GenBank) DHH family phosphoesterase
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
get
Geothrix sp. L227-G1
Pathway
get03410
Base excision repair
get03430
Mismatch repair
get03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
get00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
QOZ81_001921
03430 Mismatch repair
QOZ81_001921
03440 Homologous recombination
QOZ81_001921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
get03400
]
QOZ81_001921
DNA repair and recombination proteins [BR:
get03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
QOZ81_001921
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
QOZ81_001921
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QOZ81_001921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Toprim_3
Motif
Other DBs
NCBI-ProteinID:
WIL19406
LinkDB
All DBs
Position
complement(2125357..2127024)
Genome browser
AA seq
555 aa
AA seq
DB search
MTSLPWRLRRSIPAGLVPWKNVAEAWDLDPRPARLAWLRGVDRSEDLAWRLDPSWARSTD
PHLLPGVDAAVARIRKAIEGRERIVVYGDYDVDGVTATALLMRTLERLGAEASFFIPNRF
SDGYGLHLDCIQELKATRDPGLLISVDCGVRSLAEVAASAELGLDWVITDHHALGGELPP
ACAVVHPHLGDYANPYLAGVGVAFKLAQALLGAVPHPAGADAVFLDGLLKLVAIGTVADV
MPLVGENALLVRRGLDSLSGRNGPGLAALLRAAKKEGAIGAQDIAFGLAPRLNAVGRMGG
AEDAVRLLLTKDLGEADLLMARVEALNLERRAIQQEVADRLPAPSEAAFDLVLDAAAHKG
VIGIVAGHRMRASGRPSGVCTVLDGVAHCSLRAPEGYDLGELLALAQPFILGGGGHRVAA
GLSFEAARFPFVLQALQRGAALQAEGRERPALLLDGGPEDLPGDADLARLEPFGQGFAPP
LARLDGTVTSSAVFSADHWKLRLAGLADPLTWFANHDRPGQPRVGERLCVAAAPQGSVRW
GRSWLVDSVLGEALP
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgacctctctgccctggcgcctccgccggagcattccggcgggtctggtgccctggaag
aacgtggccgaggcctgggacctggatccccggccggcccggctcgcctggctgcggggg
gtggatcgcagcgaggacctggcctggcggctggatccatcctgggcccgcagcacggac
ccgcacctgctgccgggcgtggatgcggccgtggcgcgcatccgcaaggccattgaaggc
cgcgagcgcatcgtggtctacggcgactacgacgtggatggcgtcaccgccaccgcactg
ctgatgcgcaccctggagcggctcggcgccgaggcctccttcttcatccccaaccgcttc
tccgacggctacggcctgcacctggattgcatccaggagctgaaggccacccgcgatccg
ggcctgctcatctccgtcgactgcggcgtgcgcagcctggccgaggtggcggccagcgcc
gagctgggtctcgactgggtgatcacggaccaccacgccctgggcggggaactcccgccc
gcctgcgcggtggtgcatccccacctcggggactacgccaatccgtatctcgcgggtgtg
ggcgtggccttcaagctggcgcaggccctgctgggtgcggtgccccatccggcgggcgca
gacgcagtcttcctggacggtctgctcaagctcgtggccatcggcaccgtggcggacgtg
atgcccctggtgggtgagaacgccctgctcgtgcgccggggattggactccctcagcggg
aggaacgggcctggcctggccgccctgctgcgggccgcgaagaaggagggggccatcggc
gcccaggacatcgccttcggtctggcaccgcggctcaacgccgtgggccgcatgggcggg
gcagaggacgccgtccgcctgttgctgaccaaggatctcggcgaggccgacctgctgatg
gcccgggtggaagcgctcaacctcgagcgccgggcgatccagcaggaggtggccgatcgt
ctgccggcgccctcggaggcggccttcgatctcgtgctggacgcggcggcccacaagggc
gtcatcggcatcgtggcgggccaccggatgcgtgccagcggacgtccctcgggcgtctgc
acggtcctcgacggcgtggcccactgcagcctgcgggccccggaaggctacgacctgggc
gagctgctggccctggcccagcccttcatcctgggtgggggcggccatcgcgtggcggcc
ggactcagcttcgaggccgcccggttccccttcgtgctgcaggccctccagcggggcgcg
gcccttcaggccgaggggcgggaacggccggccctgctgctggatggtgggcccgaagat
ctgcccggggatgccgacctggcccggctggagcccttcggccagggctttgcgccgccg
ctggcccgtctcgatggcacggtcacctcgtcggccgtcttcagtgccgatcactggaag
ctgaggctggcgggcctggcggatcctctcacctggttcgccaaccacgaccgccccggc
cagccccgcgtgggcgagcggctctgcgtggccgcagccccccagggcagcgtccgctgg
gggcgctcctggctggtggattcggtcctcggggaggcgctgccgtga
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