Geothrix sp. L227-G1: QOZ81_002111
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Entry
QOZ81_002111 CDS
T09988
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
get
Geothrix sp. L227-G1
Pathway
get03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
get00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QOZ81_002111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
get03019
]
QOZ81_002111
03009 Ribosome biogenesis [BR:
get03009
]
QOZ81_002111
Enzymes [BR:
get01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QOZ81_002111
Messenger RNA biogenesis [BR:
get03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QOZ81_002111
Ribosome biogenesis [BR:
get03009
]
Prokaryotic type
rRNA helicases
QOZ81_002111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
WIL19588
LinkDB
All DBs
Position
2344217..2345869
Genome browser
AA seq
550 aa
AA seq
DB search
MTFAALGCSEALLAALAKRGFETPMPVQAQTIQPGLEGRDLLVQSRTGSGKTLAFGLPLL
QRLSDARHPQALILAPTRELAQQVGAELHTLVPKLPIASLVGGVAYPPQLKALQQGAQVI
VGTPGRVMDHLERGTLDLSRVSMIVLDECDEMLNMGFLEDVETILAKVPAGPQTYLFSAT
LPAPIAKLAKRFLKDPVQITLAEAGEHAVHADIAHTPVLAPDHQHVRALVNLLLKDQPSS
ALIFTKTKAQTEEVAEELTVSGLPAAFLHGDLAQATRTRILGQFKEGKLRYLVATDVAAR
GLDIEGLPLVVHMGIPTQLESYIHRSGRTGRAGAKGTSMALVGWKESRILLAWSRRGGLK
LDWRAVPTPAEIRETQATKLLDGIQGSVSPALLHQAAQLLKDADPVRLVAGLLGLVQADQ
ASGFDLPNEPEKKPKSRFDSPRDRKEGGPRPQRTYAERAAARGNERPDSAFSKTRPDGSF
KPRSDFEDRPRPYAKPKPEGAERPRKTWEDRPAKPEVKDTPRPWKPSVKPAGKPGPKYGE
GPAKPWKKKG
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcgcagccctcggctgcagcgaagcccttttggccgccctggccaagcgcggt
ttcgaaacccccatgcccgtccaggcccagaccatccagcccggcctcgaaggccgcgac
ctgctggtgcagagccgcactggttcgggcaagaccctggccttcggcctgccgctgctg
cagcggctctccgacgcgcgccacccccaggccctgatcctcgcgcccacgcgggagctg
gcccagcaggtgggcgccgagctgcacaccctcgtgcccaagctgcccatcgcctccctg
gtcggtggcgtggcctacccgccccagctcaaggccctgcagcagggcgcccaggtcatc
gtgggcacgccgggccgcgtgatggaccacctggagcgcggcaccctggatctcagccgc
gtgagcatgatcgtgctcgacgagtgcgacgagatgctgaatatgggcttcctcgaggac
gtggagaccatcctcgccaaggtgcccgcgggcccgcagacctacctgttctcggccacc
ctgcccgcccccatcgccaagctggcgaagcggttcctgaaggatccggtccagatcacc
ctggccgaggcgggtgagcacgccgtccacgccgacatcgcccacacccccgtgctggcg
cccgaccaccagcacgtgcgcgccctcgtgaacctgctgctgaaggaccagcccagctcc
gccctgatcttcaccaagaccaaggcccagaccgaggaggtcgccgaggagctgaccgtc
tccggcctgcccgcggccttcctccacggcgacctcgcccaggccacgcgcacccgcatc
ctgggccagttcaaggagggcaagctgcgctacctggtggccacggacgtagccgcccga
ggtcttgatatcgagggcctgcccctggtggtccacatgggcatccccacccagctggag
agctacatccaccgcagcggccgcaccggccgcgccggcgccaagggcaccagcatggcc
ctggtgggctggaaggaaagccgcatcctgctggcctggagccgccgcggcggcctcaag
ctcgactggcgcgccgtgcccacgcccgcggagatccgcgagacccaggccaccaagctc
ctcgacggcatccagggctccgtgagccctgccctgctgcaccaggccgcccagctgctg
aaggatgccgatcccgttcgcctcgtggcgggcctgctgggcctcgtccaggccgaccag
gcctccggctttgacctgcccaacgagcccgagaagaagcccaagtcccgcttcgactcc
ccccgcgatcgcaaggagggcggcccccgcccccagcgcacctacgccgagcgcgctgcc
gcgcgtggaaacgagcgtccggattccgccttctccaagacccgccccgacggcagcttc
aagccccgcagcgacttcgaggatcggccccggccctacgccaagcccaagcccgagggc
gccgaacggccccgcaagacctgggaggatcgcccggccaagcccgaggtgaaggacacc
ccgcgcccctggaagcccagcgtcaagcctgcgggtaagcccggccccaagtacggcgaa
ggccccgccaagccctggaagaagaagggctga
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