Geothrix sp. L227-G1: QOZ81_002461
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Entry
QOZ81_002461 CDS
T09988
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
get
Geothrix sp. L227-G1
Pathway
get03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
get00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QOZ81_002461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
get03019
]
QOZ81_002461
Enzymes [BR:
get01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QOZ81_002461
Messenger RNA biogenesis [BR:
get03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QOZ81_002461
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
AAA_22
Utp25_C
Amidohydro_1
Motif
Other DBs
NCBI-ProteinID:
WIL19923
LinkDB
All DBs
Position
2738315..2739610
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AA seq
431 aa
AA seq
DB search
MSFESLGLLPELLRAVREQGYETPTPIQAQAIPLVLEGRDLMGRAQTGTGKTAGFTLPLL
QRLAPHASSSASPARHPIRALILTPTRELAMQVEESVRTYGKYIPLRSTTIFGGVNINPQ
TKALRAGVEILVATPGRLLDHQGQGNLNFSQLEVLVLDEADRMLDMGFIRDIQKILALLP
AKRQTLLFSATFTDEIKQLASKFLKTPATVQITPQNTAAELVRQVVHPVDRERKRHLLAH
LITSRKLEQVLVFTRTKHGANRLSEQLDKDGISSMAIHGNKSQPQRIKALEDFKKGAVRV
LVATDIAARGLDIDMLPHVVNYELPQVPEDYIHRIGRTGRAGSEGEALSLVCVDEHGLLR
DIEKLLRKELPKDVVTGYAPDPSIPAEPIQTGRQGGSGRGRGPARPARSSSAPAPRGERG
RHPSRPGARGK
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtccttcgaatccctcgggctgctgcccgagctcctgcgcgccgtgcgcgagcagggc
tacgaaacccccacccccatccaggcccaggcgatccccctggtgctggagggtcgcgac
ctcatgggccgcgcccagaccggcaccggcaagaccgccggcttcaccctgcccctgctg
cagcgcctggcgccgcacgccagcagctcggcctcgcctgcgcgccatcccatccgcgcc
ctcatcctcacccccacccgcgagctggccatgcaggtggaggagagcgtccgcacctac
ggcaagtacatccccctgcgctccaccaccatcttcggcggcgtgaacatcaacccccag
accaaggcgctgcgcgccggcgtcgagatcctcgtggccacgcccgggcgcctcctggac
caccagggccaggggaacctgaacttcagccagctggaagtcctggtgctcgatgaggcg
gaccgcatgctcgacatgggcttcatccgcgacatccagaagatcctcgccctcctcccc
gcgaagcggcagaccctgctcttctcggccaccttcacggacgagatcaagcagctggct
tccaagttcctgaagaccccagccacggtgcagatcaccccccagaacaccgccgccgag
ctggtgcgccaggtcgtgcatcccgtggaccgcgagcgcaagcgccacctgctggcccac
ctgatcaccagccgcaagctggagcaggtgctggtcttcacccgcaccaagcacggcgcc
aatcgcctctccgagcagctcgacaaggacggcatcagctccatggccatccatggcaac
aagagccagccccagcgcatcaaggccctggaggacttcaagaagggcgccgtccgcgtg
ctcgtggccaccgatatcgccgcccgcggcctggacatcgacatgctcccccacgtggtc
aactacgagctgccccaggtgcccgaggactacatccaccgcatcggccgcaccggccgg
gccggcagcgagggcgaggccctctccctggtctgcgtggacgagcacggcctgctccgc
gacatcgagaagctgctccgcaaggagctgcccaaggacgtcgtcaccggctacgccccg
gaccccagcatccccgccgagcccatccagaccggtcggcaggggggtagtggccgtggc
cgcggtccagcccgtccagcccgtagcagctcggctcccgcgccccgcggtgagcggggc
cgccatccctcccgccctggcgcccgggggaaatag
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