Geobacter sp. SVR: GSVR_05580
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Entry
GSVR_05580 CDS
T10318
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gev Geobacter sp. SVR
Pathway
gev03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GSVR_05580 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gev03400
]
GSVR_05580 (mfd)
Enzymes [BR:
gev01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GSVR_05580 (mfd)
DNA repair and recombination proteins [BR:
gev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GSVR_05580 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
UB2H
AAA_16
AroM
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BCS52250
LinkDB
All DBs
Position
complement(577274..580801)
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AA seq
1175 aa
AA seq
DB search
MIPASTDNLIPQTIEILAELRRGRNRIVLPGLKGSAAACIVAELLRSDTAGLLVLTADQE
AADEFSRELGFFGGSDATPLSFPAWDMPPLTASSPHPDISGTRLDTLFRLQNRLARVVVL
PVAAALQRVLPLRTLGEASCYLVAGEEFEREELLARLVRMGYANAPLVEDRGTFAVRGGI
LDIFPPNLTAPVRIEFFGDTVETIRSFDPLTQRSLQPLEELVLLPSREVLLTDEVLEGIA
PRLKACCDELEIPADRRRAIQEDLKQAVYFQGVEFLQPLLHPGLETIFDYAPGRPLVLLD
PEAIREAAERFGTDIENGLVKARAARLPHAPPQELYLSPAALETILAGRACLELSGLSLS
DAGQTASIAIPCEDNGALKVTVSKETSHALAPLSHTFKEWLDTGYRVIVTCHQRAQAERL
RDLLAPYGIRCIVSEAGFPETVGAPSGQPLPHQERNVAIILGDISRGFRLPASRLALIAE
EELFGKRVRRRGISEVRKKQILSSLAELKPGDHMVHVDHGIGLYRGLQHISVAGVGGDFL
LLEYAGSDKLYLPVDRLGLVQRYVGPEGGSPSLDKLGGSGWEKSKGKARKAIEELAGELL
EIYAQRQICEGFAFSPPDELYREFEASFAWEETPDQLAAIQDVLADMQHTRPMDRLVCGD
VGYGKTEVALRGAFKSALDGKQVGVLVPTTILAQQHYETFHERLKDYPVTVEVISRFRTP
KEQKAILERLKKGDIDIIIGTHRLLQKDVAFKDLGLLIVDEEQRFGVKDKERLKAFRAVV
DVMTLTATPIPRTLYMSMMGIRDLSIIDTPPVDRLAIKTFVARFSEELIREAIMRELRRG
GQVFFVHNRVTSIAKRAEQIAAIVPEARIAVGHGQMGEHELEKVMLGFMHGETNLLICTT
IIESGLDIPNANTLIIDRADTFGLSQLYQLRGRVGRSSQRGYAYLLIPGESTITSDARER
LKILQDISELGAGFRIATHDMEIRGAGDMLGSRQSGTVTEIGFELYNQMLEETICRLRGE
EMAERVEPEINLKVPAFIPEAYIRDTNQRLVIYKKLTQAESEEDILDVQNELGDRFGAYP
LATAYLFEVMRLRIMLKRLLVRQIDYDGRQVIISFHPRTPAPPDTIITMMRTEPRKYQFT
PDYRLTCQVSGTAFEDVLATSKNVLQRLMPPAAAP
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgatacctgcttccacagacaacctgatcccccagaccatcgagattctggccgagctg
cgacgcggcaggaaccgcatcgtgctgccgggactgaaaggctcggcagccgcctgcatt
gtggcggagctgctgcgctcggacacggccggcctgctggtgctgaccgccgatcaggag
gctgccgacgagttcagccgcgagctcggcttcttcggtggcagcgatgccaccccgctc
tcctttccggcctgggatatgccccccctgacagcatcatccccccaccccgacatctcc
ggaaccaggctcgataccctcttccgcctccagaaccggctggcgcgggtcgtggtcctg
ccggtggcggcggcgctgcagcgggtgctgccgctcaggaccctgggcgaggcctcctgc
tatctggtggccggcgaagagttcgagcgcgaggaactgttggcccggctggtccggatg
ggctacgccaatgcccccctggtggaggaccgcggcacctttgccgtgcgcggcggcatc
ctggacatctttccccccaacctgacagcaccggtgcggatcgagttcttcggcgacacg
gtcgaaaccatccgctcctttgatccgctcacccaacgctcgctccagccgctggaggag
ttggtactgctcccctcgcgcgaggttctgctgaccgacgaggtactggagggcatcgcc
ccgcgcctgaaggcctgctgcgacgaactggagatcccggccgaccggcgcagggccatt
caggaagacctgaagcaggcggtctacttccagggggtcgaattcctccagcccctgctg
catcccggcctggaaaccatcttcgactatgcccccggccgtccgttggtactgctcgat
cccgaggcgatccgcgaggctgccgagcgcttcggcaccgacatcgaaaatggccttgta
aaggcgcgtgccgcccgcctgccccatgcgccaccgcaggagctgtacctgagtccggca
gcgctggagaccatcctggccggccgtgcctgcctggagctctccggcctgagcctttcg
gacgccggtcagaccgcctcgatcgccattccctgcgaagacaacggcgcactgaaggtc
acggtctccaaggagaccagccatgccctggcccccctgtcgcacacgttcaaggaatgg
ctcgacaccggctaccgggtaatcgtgacctgccatcaacgcgcccaggccgaacgcctg
cgcgatctgctcgccccctacggcatccgctgcatagtcagcgaggccggctttcccgag
acggtcggagccccttccggccagcccctcccccatcaggagaggaacgtcgccatcatt
ctgggtgacatctcgcgcgggttccgcctgccggcctcgcggctggcgctgatcgccgag
gaggagctgttcggcaagcgcgtgcgccggcgcggcatttccgaggtgcgcaagaagcag
atcctttcctccctggccgaactgaagccgggtgaccacatggtgcatgtggaccacggc
atcggtctgtaccgcggcctgcagcacatcagcgtggccggcgttggcggcgatttcctg
ctcctggaatacgccggcagcgacaagctctacctgccggtggaccggctcgggctggtg
cagcgctatgtggggcccgaggggggctccccgagcctggacaagctggggggcagcggc
tgggagaagtccaagggcaaggccagaaaggcgatcgaggaactggcgggcgagctgctg
gagatctatgcccagcgccagatctgcgaaggttttgccttttcgccgccggacgagctg
taccgcgagttcgaggcttcctttgcctgggaggagaccccggaccagttggcagccatc
caggacgtgctggccgacatgcagcacacccgccccatggaccggctggtgtgcggcgac
gtaggttacggcaagaccgaggtggccctgcggggagccttcaaatcggccctggacggc
aagcaggtcggcgtgctggtgccgaccaccatcctggcccagcagcactacgagaccttt
cacgaacgcctgaaggactacccggtcacggtggaggtgatctcgcgcttccgtaccccc
aaggagcagaaggcgatcctggagcgtctgaaaaaaggggacatcgacatcatcatcggc
acccaccgcctgctgcagaaggatgtggccttcaaggacctgggacttttgatcgtcgac
gaagagcagcgcttcggggtcaaggacaaggagcgcctgaaagccttccgggccgtggtg
gacgtgatgaccctgaccgccacccccatcccccgcaccctgtacatgtccatgatgggc
atccgcgacctgtcgatcatcgacaccccgccggtggaccgcctggcgatcaagaccttt
gtggcccgtttctccgaagagctgatccgggaggccatcatgcgcgagctgcgccgcggc
ggccaggtctttttcgtgcacaaccgggtcacctccatcgccaaacgggccgagcagatc
gccgccatcgtgcccgaggccaggatcgcggtggggcatggccagatgggggagcacgaa
ctggagaaggtcatgctcggcttcatgcacggcgagaccaacctgctgatctgcaccacc
atcatcgaatccgggctggacatccccaacgccaacaccctgatcattgatcgggccgac
accttcggcctgtcccagctctaccagctgcgcggccgggtggggcgctccagccagcgc
ggctacgcctacctgttgattccgggcgaaagcaccatcacctccgatgcgcgcgagcgc
ttgaagatcctgcaggacatctccgaactgggagccggcttccgcatcgccacccacgac
atggagatccgcggggccggcgacatgctcggcagccgccagtccggcaccgtgaccgaa
atcggcttcgagctctacaaccagatgctggaggagaccatctgccgcctgcggggcgaa
gagatggccgagcgggtcgaaccggagatcaacctgaaggtgccggccttcatccccgag
gcctatatccgcgataccaaccagcggctggtgatctacaaaaaactgacccaggccgag
agcgaagaggatatcctggacgtgcagaacgagctcggcgaccgcttcggcgcctatccg
ctggccacggcctacctgttcgaggtcatgcggctgcgcatcatgctcaagcgcctgctg
gtgcgccagatcgactacgacggccgccaggtgatcatctcgttccacccgcgcaccccg
gcgccgcccgacacgatcatcaccatgatgcgcaccgagccgcgcaagtaccagttcacc
cccgactatcgcctgacctgtcaggtctcgggcaccgccttcgaggatgtcctggccaca
tccaaaaacgtgctgcagcggctgatgccgccagcggcggcaccatga
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