Geobacter sp. SVR: GSVR_07480
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Entry
GSVR_07480 CDS
T10318
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gev Geobacter sp. SVR
Pathway
gev03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gev00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSVR_07480 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gev03019
]
GSVR_07480 (rne)
03009 Ribosome biogenesis [BR:
gev03009
]
GSVR_07480 (rne)
Enzymes [BR:
gev01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GSVR_07480 (rne)
Messenger RNA biogenesis [BR:
gev03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GSVR_07480 (rne)
Ribosome biogenesis [BR:
gev03009
]
Prokaryotic type
rRNA processing factors
GSVR_07480 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BCS52440
LinkDB
All DBs
Position
complement(790625..792853)
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AA seq
742 aa
AA seq
DB search
MATTSKKMLINVMHPEEARVAIVHDGRMMELNIEITGQEQTKGNIYKGVVLRVEPGLQAA
FVDIGRAKPGFLQMGELHPDFWQWRDDVPEEQRKRRPRIQEVLRRGQELLVQVEKDERDH
KGSSLTTYISLPGRYMVVMPGSDSHGISRKVEQEGARKQLKEIVAAMTIPEKVGYIIRTE
AVGRPQEELQKDLDNLIGMYNTIKETAADIKGAGEVYRDSGLVIRFLRDYFSDDIDEVLV
DSKEAYREAKEFFRENMPKCEKRVKLHKEKRPIFSRYQLEEQIDQIYEKRVGLPSGGSLI
IEPTEALVSIDVNSGKTSGEKGVEDTAFRTNMEAAEEVARQLRLRDLGGLIVIDFIDMRD
RKHNIEVEKTLKQALKMDKARVNLGRISDFGLMEMSRQRIAKTLNDAIHLACPHCEGRGK
VKSVEAMALSFLRKVHGAAAKGNIARVQGGLPLEVAYYLLNRKKRELVQIENDYDIEVTV
KGKTSFLLNQVELEVFKREKQLIEEIPVLEAKEEKPTAPAVSSEIAEEQAGETPQPHEPL
PAEGGKKRKRRRKKKKGSAEQAIQADHPAELPAEEQTEPVSEPPHEPETAIGEAGEGETA
AKPKKRRRRRGRKGAHAPEESLPTTAAETTVEPAAAPQPTAVPQSAPAPEQVAEPETPAE
KPKKARAPRKKKAAPEAAAPPIESPAPPAPAEPKPAAPAAPKPRRRKAPKEAEPGAVPPA
EPSEQPEPVKRTRRKKKDTENQ
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaccagcaaaaagatgttgatcaacgtgatgcaccccgaggaggcgcgggtc
gccatcgtgcatgacggccgtatgatggaactgaacatcgagatcaccggccaggagcag
accaagggaaatatttacaagggagtggttctgcgggtagaacctggcctgcaggcagcc
ttcgttgatatcggccgggcaaaaccgggattccttcaaatgggggaattgcatcccgat
ttctggcagtggcgcgacgatgtgcccgaggagcagcgcaagcgccgcccccgcatacag
gaagtgctgcgccggggccaggagctgctggtacaggtcgaaaaggacgaacgcgaccac
aaagggtcttccctgaccacctatatctctctgccggggcgctacatggtggtcatgccg
ggcagcgattcccacggcatctcccgtaaggtggagcaggagggagcccgcaagcagctg
aaggaaatcgttgccgcaatgaccatccccgagaaggtcgggtacatcatccgcaccgag
gcggtcggccggccgcaggaggaactccagaaggacctggacaacctgatcggaatgtac
aacaccatcaaggaaaccgccgccgacatcaagggagccggcgaggtttaccgggacagt
gggctggtcatccgcttcctgcgcgactacttctccgacgacatcgatgaagtgctggtg
gacagcaaggaagcctatcgcgaggccaaggagtttttccgcgaaaacatgcccaagtgc
gaaaaacgggtcaagctgcacaaggaaaagcggccgatcttttcacgttatcaactggaa
gaacagattgaccagatctatgagaaacgggtaggccttccgtccggcggctcgctgatt
atcgaacccacggaagcactggtcagcatcgacgtcaactcgggcaagaccagcggcgaa
aaaggggtcgaggacaccgccttcaggaccaacatggaagcggccgaagaggtggcacgc
cagctccggctgcgggacctgggcggactgatcgtgatcgatttcatcgatatgcgcgac
cgcaagcacaatatcgaagtggaaaagaccctcaagcaggcgctcaagatggacaaggcg
cgggtcaatctggggcgcatctcggatttcgggctgatggagatgtcccgacagcgcatt
gccaagaccctcaacgatgccatccacctggcgtgtccgcactgcgaggggcgcggcaag
gtcaaatcggtcgaggctatggcgctctccttcctgcgtaaggtacacggagccgcagcc
aaggggaatatcgcccgggtgcagggggggctgccgctggaggtggcctattatctcctc
aaccgcaagaagcgcgaactggtccagatcgagaacgactacgatatcgaggtgacggtc
aagggcaaaacctctttcctgctcaaccaggtggaactggaggtcttcaagcgcgaaaag
cagctgatcgaggaaattccggtccttgaagcgaaagaggaaaagcccacggcaccggca
gtgagctccgaaatcgccgaagagcaggccggcgagacaccgcagccccatgagcccctt
ccggcggaagggggcaaaaagcgcaagcgccgccgcaagaagaaaaagggctctgccgag
caggccatacaggccgatcatccggccgagctcccggcagaggagcagaccgaaccggtt
tcagaaccgccccatgagccggagacagccattggcgaagccggcgagggggaaactgcc
gcgaaacccaagaagcgcaggcgccgcagggggcgcaagggcgcccatgcgccagaggag
tccctgccgaccacagctgcggagacgactgtcgaaccggcagcagcgccacaaccgacc
gcagtgccacagtcggccccagcccctgaacaggtggcggaacctgaaacacctgccgaa
aaaccgaaaaaggcgagagcaccgcgcaaaaagaaagcagcacccgaagcagcggcccca
cccatcgagtcccctgcgccgccggcaccagcggaaccgaagccggcggcgcccgcggca
ccgaaaccgcgccggcggaaagcaccgaaagaagccgagccgggcgctgtccctccagca
gagccgtccgagcaaccggaaccggtcaagcgaacgcgccgcaagaaaaaggacaccgaa
aatcaatga
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