Geobacter sp. SVR: GSVR_09110
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Entry
GSVR_09110 CDS
T10318
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
gev Geobacter sp. SVR
Pathway
gev03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gev00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSVR_09110 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gev03021
]
GSVR_09110 (rho)
03019 Messenger RNA biogenesis [BR:
gev03019
]
GSVR_09110 (rho)
Transcription machinery [BR:
gev03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GSVR_09110 (rho)
Messenger RNA biogenesis [BR:
gev03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GSVR_09110 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
AAA_25
OB_RNB
NACHT
AAA
ATPase_2
S1CSD-TOTE-2
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
BCS52603
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All DBs
Position
970718..971965
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AA seq
415 aa
AA seq
DB search
MNLQELKGKKINELNTIARDLSIEGASSLRKQDLIFAILNAQTEQNGMIYGEGVLETLQD
GFGFLRATDYNYLPGPDDIYVSPSQIRRFNLRTGDTVSGQIRPPKEGERYFALLKVESVN
FEPPEVARDKILFDNLTPLYPDEKLKLETAPDNMPMRVVELVAPIGKGQRGLIVAPPRTG
KTMLIQNIANSIATNHPEVYLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPATRHVQVA
EMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPPSGKILSGGVDSNALHKPKRFFGA
ARNIEEGGSLTIIATALVDTGSKMDDVIFEEFKGTGNMELHLDRKLIEKRTFPAIDINKS
GTRKEELLIDKTSLNRIWILRKVLHPMNVVDSMEFLLDKLSETKTNQEFLDAMSK
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaacctacaggaactgaagggcaagaagatcaacgaactcaacaccatcgcacgtgat
ctcagtatcgagggagcatccagcctgcgcaagcaggacctgatcttcgcgatcctgaac
gcccagaccgaacagaacggcatgatctacggcgaaggggtgctggaaacgttgcaagat
ggtttcggttttctgagggccaccgattacaactatctgccgggtcctgacgatatctac
gtttctcccagccagatccggcgcttcaacctgcgtaccggcgataccgtttcaggtcag
atccgcccccccaaggaaggggaacgctactttgcgctgctcaaggtggagtcggtcaac
tttgaaccccctgaggtcgcccgcgacaagatcctcttcgacaacctcactccgttgtat
cccgatgaaaaactcaagctggaaactgcccctgacaacatgccgatgcgcgtggtggag
ctggtggccccgatcggcaaagggcagcgcggcctgatcgttgccccgccccggaccggc
aaaaccatgctgatccagaacatcgccaactccatcgctaccaaccatcccgaggtttat
ctgatcgtgctcctgatcgacgaacgccccgaagaggttaccgacatgcagcgttcggtc
aggggcgaggtggtttcctcgacgttcgacgagccggccacgcgccacgtgcaggtggcc
gaaatggtcatcgaaaaggccaaacgcctggttgagcacaaacgcgatgtagtgatcctg
ctggattccatcacccgtctggcgcgggcctacaacaccgtcatccccccctccggcaag
attctttccggcggggtcgactccaatgccctgcacaagcccaaacgctttttcggcgct
gcccgcaacatcgaagaggggggctccctgaccattatcgctactgccctggtggacacc
ggcagcaagatggacgacgtgatcttcgaggagttcaagggcaccggcaacatggagctg
cacctggaccgcaagctgatcgagaagcgtaccttcccggccatcgacatcaataagtcg
ggtacccgcaaggaagagctgctgatcgacaagacctccctcaaccggatctggatcctg
cgcaaggtgctccaccccatgaacgtggtcgacagcatggagttcctgctggacaagctt
tccgaaaccaagaccaatcaggaatttctggacgccatgtccaaatag
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