Geobacter sp. SVR: GSVR_14080
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Entry
GSVR_14080 CDS
T10318
Symbol
rhlE-2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gev Geobacter sp. SVR
Pathway
gev03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gev00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSVR_14080 (rhlE-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gev03019
]
GSVR_14080 (rhlE-2)
Enzymes [BR:
gev01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GSVR_14080 (rhlE-2)
Messenger RNA biogenesis [BR:
gev03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GSVR_14080 (rhlE-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BCS53100
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All DBs
Position
1530862..1532196
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AA seq
444 aa
AA seq
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MNFKAFDLHPAVAAGIAAAGFAAPTPIQEQAIPPVMAGHDVMGLAQTGTGKTAAFVLPIL
HRLMQGARGRVRALIVAPTRELAEQIHEAIVMLGGQTRLRSVTIYGGVSVNPQIEKLKGG
AEIVVACPGRLLDHLSQGTIDLSLVETLVLDEADQMFDMGFLPDIRRILKQLPPRRQTLL
FSATMPDDIRRLANDILHQPVTVQAGIIAPPVTVTHALYPVAQHLKTPLLFELLRHTDTE
SVLIFTRTKHRAKRLGEQLEKGGYKAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAA
RGIDVSSVSHVVNYDITDTAEAYIHRIGRTGRAARTGDAFTLVTTDDAAMVRTIEKKLGC
GIERRTLEGFDYSVPAPHKDTEFERPPRPPRGPGKAAAKPLPAQTAAAHGTSKGGAGRPA
SQPKPHHPGSAPAARHPRRSSRAR
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcaaagcgtttgatttgcatcccgctgttgccgccggcatcgcagcggccggc
tttgcagcgcccaccccgattcaggagcaggccattcccccggtgatggccggacatgac
gtgatgggcctggcccagaccggaaccggcaaaactgcggcctttgttctgccgatcctg
catcgcctgatgcagggggcgcggggcagggtacgggcgctgatcgttgccccgactcgg
gaactggccgagcagatccacgaggctatcgtgatgctgggggggcagacccggctcagg
agcgttaccatctacggcggggtgtcggtcaatccgcagatcgagaagctcaaagggggc
gcggagatcgtcgtggcctgtccgggccggctgctcgaccacctgagccaggggaccatc
gacctttcgctggtcgagacgctggtactggatgaggcggatcagatgttcgacatgggg
tttctgcccgatatccgccggattctcaagcagcttcccccccgtcggcagacgctgctc
ttttcggccaccatgccggacgatatccgccgccttgccaacgacatcctgcaccagccg
gtcacagtgcaggccggtatcatcgctccgccggtcaccgtgacccatgccctctacccg
gtggcccaacacctcaagacccctttgctgttcgaactgctgcgccacaccgacaccgag
tcggtgctgatcttcacccgtaccaagcatcgcgccaaacggttgggtgaacagttggaa
aaggggggctacaaggctgcctcgctccagggcaacctgtcccagaaccgccggcaggcg
gctttggacggctttcgcgacggcaccttccagatcctggtggcaaccgacatcgctgcg
cgcggcatcgatgtatccagtgtctcccacgtggtcaactacgatatcaccgacaccgcc
gaggcttacattcacaggatcggccgcaccggccgggccgcgcgcaccggtgatgccttt
accctggtgactaccgacgatgcggcaatggtgcgcaccatcgagaaaaagctcggctgc
ggcatagaacgccgcaccctggaagggttcgactacagcgtcccggctccacataaggac
actgagttcgagcgcccgccgcgcccgccccgtggccccggtaaagcggctgcaaagcct
ttgccggcccagacggccgctgcgcacggcacttccaaaggcggtgcaggccgccctgcc
tctcaacccaaaccgcaccatcccggctccgcgcctgctgcccggcatccgcgccgttcg
tcccgggcacggtga
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