Geobacter sp. SVR: GSVR_20960
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Entry
GSVR_20960 CDS
T10318
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gev Geobacter sp. SVR
Pathway
gev03410
Base excision repair
gev03430
Mismatch repair
gev03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GSVR_20960 (recJ)
03430 Mismatch repair
GSVR_20960 (recJ)
03440 Homologous recombination
GSVR_20960 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gev03400
]
GSVR_20960 (recJ)
DNA repair and recombination proteins [BR:
gev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GSVR_20960 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GSVR_20960 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GSVR_20960 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BCS53788
LinkDB
All DBs
Position
2248072..2249742
Genome browser
AA seq
556 aa
AA seq
DB search
MAVLAGTAGSGIHPLLSAILAARAVVSPEDVGRFLAPALADMHDPARMKGMAAAVDRLLA
AWRKRETVCIYGDYDVDGITGTALLVSFLREAGFICHYHIPNRFDDGYGINAAAVEQIAA
GGAHLIVSVDCGITATEEAALCRRLGIDLIIVDHHLPGEQIPDAVAVINPLQPGCDYPFK
SLAGVGVAFNLLVALRSALREQGAFDAASVPDLRRRLDLVALGTIADVVPLVGQNRIYAF
HGLKLLSTTTAPGLLSLKQVAGIKGSVSCGQVGFRLAPRLNAAGRMECAVPGVELLLGND
LQETLNLASDLDAANAERQAVERSMLEEAIAMVEDAGDSSVRRSIVLASTTWHEGVVGIV
ASRLVERYHRPTVLIALTEDGHGKGSGRSIPGFHLLDALTLCASHLKRFGGHRYAAGIGL
AADQVASFADAFEEIASRLLADEDLVPRLEIDAEVQPGDVTAELAGELKRLEPFGAGNPE
PVLMMRGVTVFERREVGEGHLRLRLGRAGRSFAAIGFGMAKHETTGLVDIAFFPEMNVWN
GSSSLQLRLKDLRPAE
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcggttttggccggaacggccgggagcgggatccacccgctgctctcggccatcctg
gctgcccgggccgttgtttccccggaggatgtcggccgttttcttgccccggccctggcg
gacatgcatgaccctgcccgcatgaagggcatggcggcagccgttgaccggctgcttgcc
gcatggcgcaaacgcgaaacagtctgcatctacggcgattacgatgtggacggcatcacc
ggtaccgccttgctggtctcctttctgcgagaggcaggttttatctgccactaccatatc
cccaatcgtttcgacgacggctacgggataaacgctgcggctgtcgagcagatcgcggct
ggcggcgcccacctgatcgtctccgtggactgtggtatcacggcaacggaagaagcggcc
ctgtgccgccggctcgggatagacctgatcattgtcgatcaccatcttccgggcgagcag
attcccgatgccgtggctgtcatcaatccgcttcaacccggctgcgattatcccttcaaa
tccctggcaggagtgggagtggccttcaacctgctggtcgccctgcgttcggcgctgcgg
gaacagggggccttcgacgcggcgagtgttcccgacctgcgccgtcggctcgatctcgtg
gcccttggcaccattgccgatgtggtgccgctggtcggccagaaccgcatctatgccttt
cacggactcaaactgctttccaccacaacggcgcccgggctcctgtcactcaagcaggtg
gccggcataaaaggcagcgtcagttgcggtcaggtcggttttcggctggcaccgcgcctg
aacgcggccggacgcatggaatgcgccgttccgggggttgagctgctgctgggcaatgac
ctgcaggagacgcttaatcttgcctcggatctcgatgccgccaatgccgagcgccaggcg
gtcgagcggagcatgctcgaagaagcgatcgccatggtcgaggatgccggcgattcttcc
gtccgccgcagcatcgtgctggccagtacgacctggcatgaaggggttgtgggtattgtt
gcatcgcggctggtcgagcgctatcatcgtcctacggtcctgatcgcacttaccgaagat
ggccacgggaaaggatccggccggagcattcccggctttcatctgctcgatgccctcaca
ctctgcgcttcccacctgaagcgcttcggcggtcatcgctacgccgcgggcatcggtctt
gcggcagaccaggtggccagcttcgccgatgccttcgaggaaatcgcgtcgcgcctgctg
gccgacgaggatcttgttccacggctggagatcgatgccgaggtgcagcccggtgatgtc
actgcggaacttgccggcgaattgaaacggctggaaccttttggcgcgggcaatcctgaa
ccggtcctgatgatgcggggagttacggtttttgaaaggcgggaagtgggggaagggcat
ctgcgcctgcgtctgggacgtgcggggcgctcctttgccgccatcggcttcggcatggcg
aaacacgagacaacagggttggtcgacatcgctttctttccggaaatgaacgtgtggaac
ggcagttcgagccttcagttgcggctcaaggatctgcggccggcggagtga
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