Geobacter sp. SVR: GSVR_22720
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Entry
GSVR_22720 CDS
T10318
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gev Geobacter sp. SVR
Brite
KEGG Orthology (KO) [BR:
gev00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gev03016
]
GSVR_22720 (rtcB)
Enzymes [BR:
gev01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GSVR_22720 (rtcB)
Transfer RNA biogenesis [BR:
gev03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GSVR_22720 (rtcB)
Prokaryotic type
tRNA splicing ligases
GSVR_22720 (rtcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BCS53964
LinkDB
All DBs
Position
complement(2437066..2438451)
Genome browser
AA seq
461 aa
AA seq
DB search
MRVPGRIIATEALLEAMEAGVFEQTANVACLPGILRYSYCMPDGHWGYGFPIGGVAAMDP
NTGVISPGGIGFDINCGMRLVLTNLTEEQVTPHLRQLVDLMFTRIPTGVGCTGFVRCSRT
EFRTVIEQGSRWCLDKGYAWPEDLEMTEEHGCFGGANADAVSEKAIERGYDQIGTLGSGN
HYCEIQVVRPENIYDRKTAEAFGITIPNQVVVMFHCGSRGFGHQVATDYLQTFLRVMTTK
YGIRIHDRELSCAPFRSPEGQAYFAAMKCAVNMGFANRQVILHRLREVFSRVFHRSPEDL
GMRMVYDVAHNTAKLETHQIEGQRREVLVHRKGATRSFGPGMAGIPECYQETGQPVIIGG
SMETGSYLLAGEKGAEATFCTTAHGSGRTMSRHQARKMVKGQKLLGEMEQRGIYVRSDSY
GGLAEEAGFAYKDIDLVTAATEEAGLSRRVVKLVPIGNIKG
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgcgggttccgggcaggatcatagccactgaagcgcttctggaggcaatggaagcgggg
gtgttcgagcagaccgccaacgtggcctgtctgcccggcatcctcaggtattcctactgc
atgccggatggacactggggctacggctttcccatcggcggcgtggcggccatggatccc
aacaccggggtaatctcccccggcgggatcggttttgacatcaattgcggcatgcggctg
gtgctgacaaatctgaccgaggaacaggttaccccccatctccggcagctggtggacctg
atgtttacccgcattcccaccggagttggctgtaccgggtttgtgcgctgttcccgcacc
gaattccgcacggtcatcgaacagggatcacgctggtgtctcgacaaaggatatgcctgg
cctgaagatctggagatgaccgaagaacacggctgtttcggcggggccaatgcggatgcg
gtgagcgagaaggctatcgagcggggatacgaccagatcggtaccttggggtcgggcaac
cattactgcgagatacaggtggtcaggccagagaacatctacgacaggaaaaccgccgag
gctttcggcattaccatcccgaaccaggtggtggtcatgttccactgcggcagccgcggc
ttcgggcatcaggtggctaccgattatctgcagacctttctcagggtcatgaccaccaag
tacggcatcaggatccacgaccgcgagctctcctgcgccccgttccgttcccccgaaggg
caggcctatttcgccgcgatgaaatgcgccgtgaatatgggattcgccaaccgccaggtg
atcctgcaccgcctgcgggaggtcttctcgcgggtctttcatagatcgcccgaagatcta
ggcatgcgcatggtctatgacgtggcccataacaccgccaagctggaaacccatcagatc
gaagggcaaagacgggaagtgctggtgcaccgcaagggagccacccgttctttcggcccc
ggcatggccggcattcccgaatgttatcaggagacgggccagccggtgatcatcggcggc
agtatggagacggggtcctaccttctggcaggggaaaaaggtgccgaggccacgttctgc
accaccgcccacggcagcggccgcaccatgagccgtcatcaggccaggaagatggtcaag
ggacagaaacttctgggagagatggagcagcgcggcatctacgttcgcagcgattcgtac
ggcggcctggccgaggaggcggggttcgcctacaaggacatcgatctggtcacagcggcc
accgaggaggcgggactcagccggcgggtggtcaaactggtgccgatcggaaatatcaag
ggctga
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integrated database retrieval system
