KEGG   Georgenia sp. TF02-10: MF406_12495
Entry
MF406_12495       CDS       T10482                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
gew  Georgenia sp. TF02-10
Pathway
gew03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:gew00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    MF406_12495
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gew03400]
    MF406_12495
Enzymes [BR:gew01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MF406_12495
DNA repair and recombination proteins [BR:gew03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     MF406_12495
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M LigD_N DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: UNX53795
LinkDB
Position
complement(2760064..2762949)
AA seq 961 aa
MASPSTTETVAVDGRRLRLTNLDKVLYPVTGTTKADVVRYYAEIAPTMLPYCAGRPATRK
RWPDGVGTAAEPGQVFFIKNLESSAPEWVVRADIEHSGGPKTYPLVNDAATLVWLAQVAA
LEVHVPQWRFGSDGAAQHPDRLVLDLDPGPGADLAACAQVAGWAREILTGMGLDPVPVTS
GSKGIHLYAALDGASTSDQVSDMAHELARVLEADHPDLVVSDMKKARRTGKVLVDWSQNN
ANKTTVAPYSLRGRERPTVAVPRTWAELAEPGLRHLELDEVLARVQTVGDPLTVLLERDD
GDPGFVTPVQDRLATYRSMRDPARTPEPVPGAVGRGAAGRGAGGRGEAGEADEADDTGDR
AAPPGPAAAAGPAAARRPTFVIQEHHARRWHLDFRLEHDGVLVSWALPKGVPTDPRENHL
AVQTEDHPLEYGSFEGEIPAGEYGGGTVRIWDAGTYELRKWHEGKEVIVVLTGRPDGGLA
EGPGRTARFALIHTGGRGGQEPRNWLIHRMADDDGARRVRRGTRAGVGGDGGSAGPGGAA
CQRRATSARASGDETVDHDGDRDDRGDHDGHEPARGGRTHHEPAGGGTRREPARQDGQHH
EPARRDRAHHAPAPHDDGRHDVARPGPAHHDGRPLPPAPMMATLGSTADLDPDAAWALEM
KWDGVRAIVDIDGHDVRLLSRNGNDVTALYPELHDVWTCLTGAERAVLDGEIVALDARGR
PSFARLQQRFNLVRPRDIERARAAAPVHLMLFDVLSADGTSYLRDTYDERRAVLRRLVDP
AAQARVEVPDAFAGDVDAAIRASREWGLEGVLAKRRDSRYTPGRRSRSWIKIKHAFAQEV
VVIGWKPGQGSRAGAVGSLLLAVPDDDGDLRYAGKVGTGFTLREAREWAARLAEAERRSA
PVPDVPALDARDARWVAPERVAEVEAAEWTGDGRLRHPRWRGWRPDKSPAEVHLEVLPAA
R
NT seq 2886 nt   +upstreamnt  +downstreamnt
atggcgagccccagcaccaccgagaccgtcgccgtcgacggtcgccgcctgcggctgacc
aacctcgacaaggtgctctaccccgtcaccggcaccaccaaggccgacgtcgtccggtac
tacgccgagatcgcccccaccatgctgccgtactgcgccggccggccggcgacccggaag
cggtggccggacggggtgggcacggcggcggagcccggtcaggtcttcttcatcaaaaac
ctggagagctcggcgccggagtgggtggtccgcgcggacatcgagcactccggcgggccg
aagacgtacccgctggtcaacgacgcggccacgctggtctggctcgcccaggtcgcggcg
ctggaggtccacgtcccacagtggcggttcggctccgacggcgccgcgcagcaccccgac
cgcctggtcctcgacctcgaccccggccccggcgcggacctggccgcctgcgcccaggtc
gccggctgggcccgggagatcctcaccggcatgggcctggacccggtgccggtgaccagc
ggctccaagggcatccacctgtacgccgccctggacggcgccagcacctccgaccaggtc
agcgacatggcgcacgagctggcccgggtgctggaggcggaccacccggacctggtcgtc
tcggacatgaagaaggcccggcggaccggcaaggtgctggtggactggtcgcagaacaac
gcgaacaagaccaccgtggcgccgtacagcctgcgcggccgggagcggcccaccgtcgcc
gtgccgcgcacctgggccgagctggccgagccgggcctgcggcacctcgagctcgacgag
gtgctggcgcgggtgcagaccgtgggggacccgctgacggtgctgctcgagcgggacgac
ggcgaccccggcttcgtcacgcccgtccaggaccggctcgcgacctaccgctccatgcgg
gaccccgcccgcaccccggaaccggtgccgggcgccgtcgggcggggcgcggccgggcgc
ggtgccggcgggcgcggggaggccggcgaggccgacgaggccgatgacaccggcgaccga
gccgccccccccgggccggccgctgccgccgggccggccgctgcccgccggccgacgttc
gtgatccaggagcaccacgcccgccgctggcacctggacttccgcctcgagcacgacggc
gtcctggtcagctgggcgctgcccaagggcgtgcccaccgacccccgggagaaccacctg
gccgtgcagaccgaggaccacccgctggagtacggctcgttcgagggggagatcccggcg
ggggagtacggcggcggcacggtccggatctgggacgcgggcacctacgagctgcgcaag
tggcacgagggcaaggaggtcatcgtcgtgctcaccggccgcccggacggcgggctggcc
gaggggccgggccggacggcccggttcgcgctgatccacaccggcggccgcggcggccag
gagccgcggaactggctgatccaccggatggccgacgacgacggcgcccggcgggtgcgt
cgcggcacgagggcgggggtcgggggcgacggtgggagcgcgggtcccggcggcgcggcc
tgccagcgccgcgccacgtcagcccgcgcgtccggcgacgaaaccgttgaccacgacggc
gaccgcgacgaccgcggggaccacgacggccacgagcccgcgcgcggcggccgcacccac
cacgagcccgcgggcggcggcacacgccgtgagcccgcgcgccaggacggccaacaccac
gagcccgcgcgtcgggaccgcgcgcaccacgcgcccgcgccccacgacgacggtcgccac
gacgtcgcgcgccccgggcccgcgcaccacgacggccgccccctgcccccggcaccgatg
atggccaccctcggcagcaccgccgacctcgaccccgacgccgcgtgggcgctggagatg
aagtgggacggcgtgcgcgccatcgtcgacatcgacggtcacgacgtccgcctcctcagc
cgcaacggcaacgacgtcaccgccctgtaccccgagctgcacgacgtctggacctgcctg
accggtgccgagcgcgccgtgctcgacggggagatcgtcgccctcgacgcccgcggccgg
ccgagctttgcccgcctgcagcagcgcttcaacctcgtccggccgcgggacatcgagcgc
gcccgggccgccgcgccggtccacctgatgctcttcgacgtcctgtccgccgacggcacg
tcctacctgcgggacacctacgacgagcgccgcgcggtcctgcgccggctggtcgacccc
gccgcccaggcccgggtggaggtccccgacgccttcgccggtgacgtcgacgccgccatc
cgcgcatcccgggagtggggcctggagggcgtcctggccaagcgtcgtgactcccggtac
acccccggccgccgctcgcggtcctggatcaagatcaagcacgccttcgcccaggaggtg
gtggtcatcgggtggaagcccggccagggcagccgcgcgggcgccgtcggctccttgctg
ctggccgtgcccgacgacgacggcgacctgcgctacgcgggcaaggtcggcaccgggttc
accctgcgggaggcccgggagtgggccgccaggctcgccgaggcggagcgccggagcgcc
ccggtgccggacgtcccggccctcgacgcccgcgacgcgcggtgggttgcccccgagcgg
gtggccgaggtcgaggctgcggagtggaccggggacgggcggctgcgccacccgcggtgg
cgcggctggcggccggacaagtccccggcggaggtgcacctggaggtgctgcccgccgcc
cggtga

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