Georgenia sp. TF02-10: MF406_12495
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Entry
MF406_12495 CDS
T10482
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gew Georgenia sp. TF02-10
Pathway
gew03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MF406_12495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gew03400
]
MF406_12495
Enzymes [BR:
gew01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MF406_12495
DNA repair and recombination proteins [BR:
gew03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MF406_12495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UNX53795
LinkDB
All DBs
Position
complement(2760064..2762949)
Genome browser
AA seq
961 aa
AA seq
DB search
MASPSTTETVAVDGRRLRLTNLDKVLYPVTGTTKADVVRYYAEIAPTMLPYCAGRPATRK
RWPDGVGTAAEPGQVFFIKNLESSAPEWVVRADIEHSGGPKTYPLVNDAATLVWLAQVAA
LEVHVPQWRFGSDGAAQHPDRLVLDLDPGPGADLAACAQVAGWAREILTGMGLDPVPVTS
GSKGIHLYAALDGASTSDQVSDMAHELARVLEADHPDLVVSDMKKARRTGKVLVDWSQNN
ANKTTVAPYSLRGRERPTVAVPRTWAELAEPGLRHLELDEVLARVQTVGDPLTVLLERDD
GDPGFVTPVQDRLATYRSMRDPARTPEPVPGAVGRGAAGRGAGGRGEAGEADEADDTGDR
AAPPGPAAAAGPAAARRPTFVIQEHHARRWHLDFRLEHDGVLVSWALPKGVPTDPRENHL
AVQTEDHPLEYGSFEGEIPAGEYGGGTVRIWDAGTYELRKWHEGKEVIVVLTGRPDGGLA
EGPGRTARFALIHTGGRGGQEPRNWLIHRMADDDGARRVRRGTRAGVGGDGGSAGPGGAA
CQRRATSARASGDETVDHDGDRDDRGDHDGHEPARGGRTHHEPAGGGTRREPARQDGQHH
EPARRDRAHHAPAPHDDGRHDVARPGPAHHDGRPLPPAPMMATLGSTADLDPDAAWALEM
KWDGVRAIVDIDGHDVRLLSRNGNDVTALYPELHDVWTCLTGAERAVLDGEIVALDARGR
PSFARLQQRFNLVRPRDIERARAAAPVHLMLFDVLSADGTSYLRDTYDERRAVLRRLVDP
AAQARVEVPDAFAGDVDAAIRASREWGLEGVLAKRRDSRYTPGRRSRSWIKIKHAFAQEV
VVIGWKPGQGSRAGAVGSLLLAVPDDDGDLRYAGKVGTGFTLREAREWAARLAEAERRSA
PVPDVPALDARDARWVAPERVAEVEAAEWTGDGRLRHPRWRGWRPDKSPAEVHLEVLPAA
R
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atggcgagccccagcaccaccgagaccgtcgccgtcgacggtcgccgcctgcggctgacc
aacctcgacaaggtgctctaccccgtcaccggcaccaccaaggccgacgtcgtccggtac
tacgccgagatcgcccccaccatgctgccgtactgcgccggccggccggcgacccggaag
cggtggccggacggggtgggcacggcggcggagcccggtcaggtcttcttcatcaaaaac
ctggagagctcggcgccggagtgggtggtccgcgcggacatcgagcactccggcgggccg
aagacgtacccgctggtcaacgacgcggccacgctggtctggctcgcccaggtcgcggcg
ctggaggtccacgtcccacagtggcggttcggctccgacggcgccgcgcagcaccccgac
cgcctggtcctcgacctcgaccccggccccggcgcggacctggccgcctgcgcccaggtc
gccggctgggcccgggagatcctcaccggcatgggcctggacccggtgccggtgaccagc
ggctccaagggcatccacctgtacgccgccctggacggcgccagcacctccgaccaggtc
agcgacatggcgcacgagctggcccgggtgctggaggcggaccacccggacctggtcgtc
tcggacatgaagaaggcccggcggaccggcaaggtgctggtggactggtcgcagaacaac
gcgaacaagaccaccgtggcgccgtacagcctgcgcggccgggagcggcccaccgtcgcc
gtgccgcgcacctgggccgagctggccgagccgggcctgcggcacctcgagctcgacgag
gtgctggcgcgggtgcagaccgtgggggacccgctgacggtgctgctcgagcgggacgac
ggcgaccccggcttcgtcacgcccgtccaggaccggctcgcgacctaccgctccatgcgg
gaccccgcccgcaccccggaaccggtgccgggcgccgtcgggcggggcgcggccgggcgc
ggtgccggcgggcgcggggaggccggcgaggccgacgaggccgatgacaccggcgaccga
gccgccccccccgggccggccgctgccgccgggccggccgctgcccgccggccgacgttc
gtgatccaggagcaccacgcccgccgctggcacctggacttccgcctcgagcacgacggc
gtcctggtcagctgggcgctgcccaagggcgtgcccaccgacccccgggagaaccacctg
gccgtgcagaccgaggaccacccgctggagtacggctcgttcgagggggagatcccggcg
ggggagtacggcggcggcacggtccggatctgggacgcgggcacctacgagctgcgcaag
tggcacgagggcaaggaggtcatcgtcgtgctcaccggccgcccggacggcgggctggcc
gaggggccgggccggacggcccggttcgcgctgatccacaccggcggccgcggcggccag
gagccgcggaactggctgatccaccggatggccgacgacgacggcgcccggcgggtgcgt
cgcggcacgagggcgggggtcgggggcgacggtgggagcgcgggtcccggcggcgcggcc
tgccagcgccgcgccacgtcagcccgcgcgtccggcgacgaaaccgttgaccacgacggc
gaccgcgacgaccgcggggaccacgacggccacgagcccgcgcgcggcggccgcacccac
cacgagcccgcgggcggcggcacacgccgtgagcccgcgcgccaggacggccaacaccac
gagcccgcgcgtcgggaccgcgcgcaccacgcgcccgcgccccacgacgacggtcgccac
gacgtcgcgcgccccgggcccgcgcaccacgacggccgccccctgcccccggcaccgatg
atggccaccctcggcagcaccgccgacctcgaccccgacgccgcgtgggcgctggagatg
aagtgggacggcgtgcgcgccatcgtcgacatcgacggtcacgacgtccgcctcctcagc
cgcaacggcaacgacgtcaccgccctgtaccccgagctgcacgacgtctggacctgcctg
accggtgccgagcgcgccgtgctcgacggggagatcgtcgccctcgacgcccgcggccgg
ccgagctttgcccgcctgcagcagcgcttcaacctcgtccggccgcgggacatcgagcgc
gcccgggccgccgcgccggtccacctgatgctcttcgacgtcctgtccgccgacggcacg
tcctacctgcgggacacctacgacgagcgccgcgcggtcctgcgccggctggtcgacccc
gccgcccaggcccgggtggaggtccccgacgccttcgccggtgacgtcgacgccgccatc
cgcgcatcccgggagtggggcctggagggcgtcctggccaagcgtcgtgactcccggtac
acccccggccgccgctcgcggtcctggatcaagatcaagcacgccttcgcccaggaggtg
gtggtcatcgggtggaagcccggccagggcagccgcgcgggcgccgtcggctccttgctg
ctggccgtgcccgacgacgacggcgacctgcgctacgcgggcaaggtcggcaccgggttc
accctgcgggaggcccgggagtgggccgccaggctcgccgaggcggagcgccggagcgcc
ccggtgccggacgtcccggccctcgacgcccgcgacgcgcggtgggttgcccccgagcgg
gtggccgaggtcgaggctgcggagtggaccggggacgggcggctgcgccacccgcggtgg
cgcggctggcggccggacaagtccccggcggaggtgcacctggaggtgctgcccgccgcc
cggtga
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