Georgenia sp. TF02-10: MF406_18155
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Entry
MF406_18155 CDS
T10482
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gew Georgenia sp. TF02-10
Pathway
gew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MF406_18155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gew03019
]
MF406_18155
Messenger RNA biogenesis [BR:
gew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MF406_18155
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
UNX56572
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Position
unnamed1:complement(34364..36049)
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AA seq
561 aa
AA seq
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MSHPHPELGPPAELPKGGLRVIPLGGLGEVGRNMTVFEYDGRLLIVDCGVLFPDEHHPGV
DLILPDFAPIRDRLDAVEALVLTHGHEDHIGATPYLLREREDIPLVGSELTLALVNSKIR
EHRLKQTAFQTVKEGDRVSFGPFDLEFVAVNHSIPDALAVAIRTGAGMVLHTGDFKMDQL
PLDGRITDLRAFARLGEEGVDLFLTDSTNAEVPGFTTQEKKITPVLDQVFRDADQRIIVA
CFASHVHRVQQILDTAVAHGRKVAFVGRSMVRNMGIARDLGYLTIPPGVMVEAKELAELP
PERQVLISTGSQGEPMSALARIANRTHNFVHLEAGDTVVLASSLIPGNENAVYRVINGLA
RWGAHVVHKGNALVHVSGHASAGELLYCYNIVRPRNVLPVHGEIRHMLANGALAKETGVD
NVVYAEDGVVVDLVDGVAKVVGKVDVGYVFVDGQSIGDVTEAELKDRRILGEEGFISVIV
VVDSVAGKVSAGPEIHARGHAWAHSDFEGIKQPIVDAVNRSIEEGNTDTYQLQQTVRRTI
GRWVSNTHRRRPMIIPVVVEA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagccacccgcaccccgagctcggccccccggcggagctgccgaagggcggcctgcgg
gtcatccccctcggcggcctcggcgaggtcggccgcaacatgaccgtcttcgagtacgac
ggccggctcctgatcgtcgactgcggcgtcctcttccccgacgagcaccaccccggcgtc
gacctgatcctccccgacttcgcccccatccgcgaccggctcgacgccgtcgaggcgctg
gtgctgacccacggtcacgaggaccacatcggcgcgacgccgtacctgctccgcgagcgg
gaggacatccccctcgtcggctccgagctgaccctcgccctggtcaacagcaagatccgc
gagcaccggctcaagcagaccgcgttccagacggtcaaggagggcgaccgggtcagcttc
ggcccgttcgacctcgagttcgtcgccgtcaaccactcgatccccgacgcgctcgccgtg
gcgatccgcaccggcgccgggatggtgctgcacaccggcgacttcaagatggaccagctg
ccgctcgacggccggatcaccgacctgcgggcgttcgcccggctgggggaggagggggtc
gacctcttcctgaccgactccaccaacgccgaggtgccgggcttcaccacccaggagaag
aagatcaccccggtcctcgaccaggtcttccgcgacgccgaccagcggatcatcgtcgcc
tgcttcgcctcccacgtgcaccgcgtgcagcagatcctcgacaccgccgtcgcccacggc
cgcaaggtcgcgttcgtcggccggtcgatggtgcgcaacatgggcatcgcccgcgacctc
ggctacctcacgatcccgcccggcgtgatggtcgaggccaaggagctcgccgagctgccg
ccggagcggcaggtgctgatctcgaccgggtcgcagggggagccgatgagcgctctcgcg
cggatcgccaaccgcacccacaacttcgtccacctggaggcgggcgacaccgtggtgctg
gcgtccagcctgatccccggcaacgagaacgcggtctaccgcgtcatcaacggcctcgcc
cggtggggcgcccacgtcgtgcacaagggcaacgcactcgtgcacgtcagcggccacgcc
agcgccggcgagctgctctactgctacaacatcgtgcggccccgcaacgtgctgccggtc
cacggcgagatccggcacatgctggccaacggcgcgctggccaaggagaccggcgtcgac
aacgtcgtctacgccgaggacggcgtcgtggtcgacctggtcgacggcgtcgcgaaggtg
gtcggcaaggtcgacgtgggctacgtgttcgtcgacggccagtcgatcggcgacgtgacc
gaggccgagctgaaggaccgccggatcctcggtgaggagggcttcatctcggtgatcgtg
gtcgtcgactcggtcgccgggaaggtctccgccgggcccgagatccacgcccgcggtcac
gcctgggcccactccgacttcgagggcatcaagcagccgatcgtcgacgcggtcaaccgc
tcgatcgaggaaggcaacaccgacacctaccagctgcagcagacggtgcgccgcacgatc
gggcgctgggtgagcaacacccaccgtcgccggccgatgatcatcccggtcgtcgtcgag
gcgtag
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