Geothrix oryzae: GETHOR_04390
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Entry
GETHOR_04390 CDS
T09137
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
gex
Geothrix oryzae
Pathway
gex03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gex00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GETHOR_04390
09124 Replication and repair
03420 Nucleotide excision repair
GETHOR_04390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gex03021
]
GETHOR_04390
03400 DNA repair and recombination proteins [BR:
gex03400
]
GETHOR_04390
Enzymes [BR:
gex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GETHOR_04390
Transcription machinery [BR:
gex03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
GETHOR_04390
DNA repair and recombination proteins [BR:
gex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
GETHOR_04390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
DEAD
Motif
Other DBs
NCBI-ProteinID:
BDU68338
UniProt:
A0AA48GQI6
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All DBs
Position
503745..505490
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AA seq
581 aa
AA seq
DB search
MIALRPDNPLIVQSDRTLLLEVAHPDFEQVRDELARFAELVKSPEHIHTYRITPLSLWNA
SASGVACADILETLNTWSKYPVPQNLLQEIEDHGTRYGKLRLVAKGDRLALEMDDRGLFW
ELENQKSLFGLLAEPYPDEKGIFLHTGMRGEVKLQLIRLGHPVQDMAGYKPGDPLPFELS
PITKQNGKPFGLRHYQQAAVDVFHAGGGPDGGAGVLVLPCGAGKTVIGIGCMGSLQTHTL
VLTTNGTAVKQWKQELLDKTTLTEDQVGLYTGDTKEIKPVTIATYQILTYRRSKTGPFEH
FKLFEAANWGLVIYDEVHMLPAPVFRAVAELQAKRRLGLTATLVREDGKEEDVFSLIGPK
RVDVPWKMLEKDGFIATAHCLEIRVPLPTDERMEYAVADQRQRFRIASENSLKLAVMDEL
LAGHPKDNILVIGQYLEQLRIIGERLGAPVLTGQTPEKEREVLFRQFREGQLRVLIVSKV
ANFAIDLPDASVAIQVSGTFGSRQEEAQRLGRILRPKGERNVSYFYSLISSETTEQEFAR
NRQLFLTEQGYRYLIESRRFDDTGHLNEPAVWKRLLEETAG
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgccctccgacccgacaatcccctgatcgtccagagcgatcgcaccctgctgctc
gaggtggcgcaccctgatttcgagcaggtgcgcgacgagctggcccgtttcgcggaactg
gtgaagagccccgagcacatccacacctaccgcatcacgcccctgagtctctggaacgcc
tcggcttcgggcgtggcctgcgcggacatcctcgagaccttgaacacctggtccaaatac
ccggtgccgcagaacctgctgcaggagatcgaggaccacggcacgcgctacggcaagttg
cgcctggtggccaagggcgaccggctggcgctggaaatggatgaccggggcctcttctgg
gaactcgagaaccagaagtccctgttcggcctgctggcggagccctatccggacgagaag
ggcatcttcctgcacacggggatgcgcggcgaggtgaagctgcagctcatccgcctgggc
caccccgtccaggacatggccggctacaagcccggcgacccgctccccttcgagctgtcg
cccatcaccaagcagaatggcaagcccttcggcctgcgccactaccagcaggccgcggtg
gatgtcttccacgcgggcggagggcccgacggtggtgcgggcgtgctggtgctgccctgc
ggcgcggggaagacggtcatcggcatcggctgcatgggcagcctgcagacgcacaccctg
gtgctcaccaccaacggcaccgccgtgaagcagtggaagcaggagctgctggacaagact
acgctcaccgaagaccaggtgggcctctacacgggcgacaccaaggagatcaagcccgtc
accatcgccacctaccagatcctcacctaccgccggagcaagacggggcccttcgagcac
ttcaagctcttcgaggccgccaactgggggctggtgatctacgacgaagtgcacatgctg
cccgcgccggtgttccgcgcggtggccgagctccaggccaagcggcgcctgggcctcacg
gccaccctggtgcgcgaggacggcaaggaagaggatgtcttcagcctcatcggccccaag
cgggtggatgtgccctggaagatgctggagaaggacggcttcatcgccacggcccactgc
ctcgaaatccgggttcccctgccgaccgacgagcgcatggagtacgccgtggcggaccag
cgccagcgcttccgcatcgcctcggagaacagcctgaagctggcggtgatggacgaactg
ctggccgggcaccccaaggacaacatcctcgtcatcggccagtacctcgagcagctccgg
atcatcggggagcgcctgggggcgccggtgctcacgggacagacccccgagaaggagcgc
gaggtgctcttccggcagttccgcgaaggccagctgcgggtgctcatcgtgagcaaggtg
gccaatttcgccatcgacctgcccgatgcctccgtggccatccaggtgagcggcaccttc
ggctcgcgccaggaggaggcccagcgcctgggccggatcctgcgtcccaagggcgagcgc
aatgtgagctacttctattcgctcatcagcagcgaaaccaccgagcaggaattcgcccgc
aaccgccagctgttcctcacggagcagggctaccgctacctcatcgaaagccgccgtttc
gacgacacgggccacctcaacgagccggccgtctggaagcggctgctggaggaaaccgca
ggctag
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