Geothrix oryzae: GETHOR_21900
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Entry
GETHOR_21900 CDS
T09137
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gex
Geothrix oryzae
Pathway
gex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GETHOR_21900 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gex03019
]
GETHOR_21900 (rhlE)
Enzymes [BR:
gex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GETHOR_21900 (rhlE)
Messenger RNA biogenesis [BR:
gex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GETHOR_21900 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Utp25_C
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BDU70089
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All DBs
Position
2454715..2456010
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AA seq
431 aa
AA seq
DB search
MSFDTLGLMPELLRAVREQGYEHPTPIQVQAIPLVLEGRDLMGRAQTGTGKTAGFTLPML
QRLAHHANTSASPARHPIRALILTPTRELAMQVEESVRTYGKYIPLRSTTIFGGVNINPQ
TKALRAGVEILVATPGRLLDHQGQGNLNFSQLEVLVLDEADRMLDMGFIRDIQKILALLP
TSRQTLLFSATFTDEIKQLASKFLKAPASVQITPQNTAAELVRQVVHPVDRERKRALLAH
LITSRKLEQVLVFTRTKHGANRLSEQLDKDGISSMAIHGNKSQPQRIKALEDFKKGAVRV
LVATDIAARGLDIDSLPHVVNYELPQVPEDYIHRIGRTGRAGAEGEALSLVCVDEHKLLK
DIEKLLRKELPRDVVHGYAPDPSIPAEPILTGRQGGGGGRSRGPARPRAAAAPAPRGERG
RHPSRPGARGK
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtccttcgataccctcgggctgatgcccgagctcctgcgcgccgtacgcgagcagggc
tacgaacaccccacccccatccaggtccaggccattcccctggtgctggaaggccgcgat
ctcatgggccgggcccagaccggcaccggcaagacggccggcttcacgctgcccatgctg
cagcggctggcgcaccacgccaacacctcggcctcgcccgcgcgccatcccatccgcgcc
ctcatcctcacccccacccgcgagctggccatgcaggtggaggagagcgtccgcacctac
gggaagtacatccccctgcggtccaccaccatcttcggcggcgtgaacatcaacccccag
accaaggccctccgcgccggcgtcgagatcctcgtcgccacccccggccgcctgctggac
caccagggccagggcaacctgaacttcagccagctcgaagtcctggtgctggacgaagcc
gaccgcatgctcgacatgggcttcatccgcgacatccagaagatcctggccctgctgccc
accagccggcagaccctgctcttctcggccaccttcacggacgagatcaagcagctggcc
tccaagttcctgaaggcccccgcctcggtgcagatcaccccccagaacaccgccgccgag
ctggtccgccaggtcgtccaccccgtggaccgcgagcgcaagcgcgccctgctggcgcac
ctgatcaccagccgcaagctcgagcaggtgctggtgttcacccgcaccaagcacggcgcc
aaccggctctccgagcagctggacaaggacggcatcagctccatggccatccacggcaac
aagagccagccccagcgcatcaaggccctggaggacttcaagaagggcgccgtccgcgtc
ctggtggccaccgacatcgccgcgcggggcctggacatcgacagcctgccccatgtggtg
aactacgagctgccccaggtgcccgaggactacatccaccgcatcggccgcacaggccgc
gccggcgccgagggcgaggccctctccctggtctgcgtggacgagcacaagctgctcaag
gacatcgagaagctgctccgcaaggaactgccccgggatgtggtccacggctacgccccg
gaccccagcatccccgccgagcccatcctgaccggccgccagggcggcggtggcggacgg
agccggggccccgcccgtccccgtgccgcggcggctccggccccccggggcgagcgcggc
cgtcatccctcgcgacctggtgcccgcgggaagtga
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