Geothrix oryzae: GETHOR_22800
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Entry
GETHOR_22800 CDS
T09137
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
gex
Geothrix oryzae
Brite
KEGG Orthology (KO) [BR:
gex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gex03032
]
GETHOR_22800 (topA)
03400 DNA repair and recombination proteins [BR:
gex03400
]
GETHOR_22800 (topA)
Enzymes [BR:
gex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GETHOR_22800 (topA)
DNA replication proteins [BR:
gex03032
]
Prokaryotic type
DNA Topoisomerases
GETHOR_22800 (topA)
DNA repair and recombination proteins [BR:
gex03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GETHOR_22800 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
HVO_A0261_N
Zn_ribbon_19
Motif
Other DBs
NCBI-ProteinID:
BDU70179
UniProt:
A0ABN6UYN6
LinkDB
All DBs
Position
2559729..2562200
Genome browser
AA seq
823 aa
AA seq
DB search
MTKLVIVESPSKAKTITKYLGKGYKVMASVGHIRDLPRKLGVDIENGFQEEYEISPAKEK
VVKELKAAAKTATELVLATDPDREGEAISWHLLEAIKPPKTLPVSRVLFNEITPAGIAKA
MAAPTIINKKLVDAQRARRVLDRLVGYKVSQVLWDKVRRGLSAGRVQSVAARIIVDRERE
ILAFNPVEYWVLKGRFAAKLPPSFWMKLVKLGGQPLQLGNKETKRRVADAVQAKDLKAQL
EKAAYTVTGLETKEKKRNPAAPFTTAKLQQESAQKLKMSVSRTMQNAQRLYEGVDFGEGP
VGLITYMRTDSPRLAPEAVEATRTFIGEKYGQEYLPAKARIFTGKAGAQDAHEAIRPTDI
TRTPESLRGHLEPDQFRLYALIWRRTMACQMEAARFDETVVQTEAPVGKDTALFEAKGEI
ERFPGWLAVYRADKTEEDAEGIADATKGDEEDEDEALLPALKLGEALKLEQLDADQQFTK
PPARFNEATLVKELEEDGIGRPSTYASIISTIQDRDYVKKHEGRFKPTELGMVVTDLLIQ
GFPRLLDTKYTSGMEGNLDLIEVGKLTFKKAMTDFYGPFEQALAAAGQDMQNLKAGVPTG
EKCPKCGDRKKHPGTLLKRIGRNGLFVGCTNYSAELEKDKCDYTADLEKMEEPEDAPECP
LCGTTPMNLRKGQWGPFWACPNYPKCKGIVKADPKGIPVPPDEPTGETCPNCGKGFVKRH
GRYGEFVCCIDYPTCKTVKKEILAVPCPKCGGGLSPRKTRFGKVFYGCTNYPKCDFTAWD
KPVPVTCPACKNPSMGEKTRKPRGKDPIQVLLCPKCGHEEPMG
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
gtgactaagctcgtgatcgtcgaaagcccatcgaaggcgaagaccatcaccaagtacctc
ggcaaggggtacaaggtcatggcctccgtggggcacatccgggacctgccccgcaagctg
ggcgtggacatcgagaacgggttccaggaggaatacgagatcagcccggccaaggagaag
gtggtcaaggagctgaaggccgccgccaagaccgccaccgagctggtgctcgccaccgac
cccgaccgcgagggggaggccatcagctggcacctgctggaggccatcaagccccccaag
accctgcccgtgagccgggtcctcttcaacgagatcaccccggcgggcatcgccaaggcc
atggccgcgcccaccatcattaataagaagctggtggacgcccagcgggcccgccgcgtg
ctggaccgcctggtgggctacaaggtcagccaggtgctctgggacaaggtgcgccgcggc
ctcagcgcgggccgcgtgcagagcgtggccgcccgcatcatcgtcgaccgcgagcgggag
atcctggccttcaaccccgtggagtactgggtgctgaagggccggttcgccgccaagctg
ccgccctccttctggatgaagctcgtgaagctgggcggccagccgctgcagctgggcaac
aaggagaccaagcgccgcgtggccgacgccgtccaagccaaggatctgaaggcccagctc
gagaaggccgcctacacggtcacgggcctggagaccaaagagaagaagcgcaaccccgcc
gcccccttcaccaccgccaagctgcagcaggaatcggcccagaagctgaagatgagcgtg
agccgcaccatgcagaacgcccagcggctgtacgagggcgtggacttcggcgaaggcccc
gtgggcctcatcacctacatgcgcacggattcgccccgcttggcccccgaggccgtggag
gccacccgcaccttcatcggcgagaaatacggccaggagtacctgcccgccaaggcccgc
atcttcaccggcaaggccggggcgcaggatgcccacgaggccatccgccccaccgacatc
acccgcacgcccgagagcctgcggggccacctggagcccgatcagttccgcctctacgcc
ctcatctggcggcgcaccatggcctgccagatggaggccgcccgcttcgacgagacggtg
gtgcagaccgaggcccccgtgggcaaggacacggccctgttcgaggccaagggcgaaatc
gagcgcttccccggctggctggcggtctaccgggccgacaagaccgaggaggatgccgag
ggcatcgccgacgccaccaagggcgacgaggaggacgaggacgaggccctgctgccggcc
ctgaagctgggcgaggccctgaagctcgagcagctcgacgccgaccagcagttcaccaag
ccccccgcgcgcttcaacgaggccacgctggtgaaggagctggaagaggatggcatcggc
cgcccgtccacctacgccagcatcatcagcaccatccaggaccgcgactatgtgaagaag
cacgagggccgcttcaagcccacggagctgggcatggtggtcaccgacctgctcatccag
ggcttcccccgcctgctggacacgaaatacacctcgggcatggagggcaacctcgacctc
atcgaggtgggcaagctcaccttcaagaaggccatgacggacttctacggccccttcgag
caggccctggccgccgccgggcaggacatgcagaacctgaaggccggcgtgcccacgggc
gagaagtgccccaagtgcggtgaccgcaagaagcaccccggcacgctgctcaagcgcatc
ggccgcaacgggctcttcgtgggctgcaccaactacagcgccgagcttgaaaaggacaag
tgcgactacaccgcggacctcgagaagatggaggagcccgaggacgcgcccgagtgcccg
ctctgcggcaccacgcccatgaacctgcgcaagggccagtggggccccttctgggcctgc
cccaactaccccaagtgcaagggcatcgtgaaggccgatccgaaaggcattccggttccc
cccgacgagcccaccggcgagacctgtcccaactgcggcaagggcttcgtgaagcgccac
ggccgctacggcgagttcgtctgctgcatcgactaccccacctgcaagaccgtgaagaag
gagatcctggccgtgccctgccccaagtgcggcggcggcctcagcccccggaagacccgc
ttcggcaaggtcttctacggctgcaccaactaccccaagtgcgacttcaccgcctgggac
aagcccgtccccgtcacctgccccgcctgcaagaatcccagcatgggcgagaagacccgc
aagccgaggggcaaggaccccatccaggtgctgctctgccccaagtgcgggcatgaagag
ccgatgggatga
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integrated database retrieval system
