Geothrix oryzae: GETHOR_25780
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Entry
GETHOR_25780 CDS
T09137
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gex
Geothrix oryzae
Pathway
gex03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gex00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GETHOR_25780 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gex03021
]
GETHOR_25780 (rpoB)
03400 DNA repair and recombination proteins [BR:
gex03400
]
GETHOR_25780 (rpoB)
Enzymes [BR:
gex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GETHOR_25780 (rpoB)
Transcription machinery [BR:
gex03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GETHOR_25780 (rpoB)
DNA repair and recombination proteins [BR:
gex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GETHOR_25780 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF7577
Zn_ribbon_RanBP
DZR
DUF5817
Zn_ribbon_6
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
BDU70477
UniProt:
A0ABM8DTT3
LinkDB
All DBs
Position
complement(2915156..2919550)
Genome browser
AA seq
1464 aa
AA seq
DB search
MSVQQNIYRQRHNFSKIRSLVPIPNLIDIQKRSYDEFLQMNLLHSERETRGLKAVFESMF
PVQNGKNPDGSDATLEVEFLDYTVGHWACKCEKYLGLEHLRTQCKQCGHNIVSDHPKDPT
VDCPKCGTRNKNAATICDVCQEPVSMKQKMGMDECVERGATMAAPLKIRVRLNQFDRDDK
GNRRFKQSQDSEVYFGDLPIMTDRGTFIINGTERVIVSQLHRSPGVFFSIAPDKSLYSAQ
IIPYRGSWIEFELDSKGLLYARIDRKRKFLGATFMRALGLFSEDLNSNEPMLRHFYTPAT
FFLKKGKLSVALSDLLAGRKLGEAVKHPKTKEEILAKDKKITRRVLEQMEKAGIKDVPVE
REMLDGAVLLQDVVNMGTGEVLMEANEPFLQTHLEMFLANDVQSFDVFFPEADATGKVFS
ETLAKDHTEDSEEAAKELFKKIRPGEPATLESSKKLLYGMFFDGQKYDLSKVGRHKINAK
LGLNTDLEFRTLGTDDFIRTVHYLLRLKKYDTTRQDIGEIAPVRADDIDHLGNRRVRSVG
ELLENGFRVGLVRVQRAIKEKFSIAQDPNSPLQAHDLINSKPVIAAMKEFFGSSQLSQFM
DQTNPLSEITHKRRLSALGPGGLSRDRAGFEVRDVHTSHYGRICPIETPEGPNIGLISSL
SCYARINEFGFIESPYLKVENGRIVHFAKVTSVGDSKFGYMDVVRLEDLEDENKKLTKGG
KRPAKYEMHAFYLSAWEEDEHVIAQANVPVDKDGAITEEDVTVRVAGETKIVSRDKVTLM
DVSPKQVVSVAASLIPFLENDDANRALMGANMQRQAVPLIRTEAPIVGTGMEYVAAKDSG
ACVVCRRSGIVETVDANRIVVRVEDDPETEGIESGVDIYTLVKFARSNQNTCLNQTPLVK
KGEYVTEDQILADGPCTDHGELALGRNLVVAYMPWRGYNFEDAILISERVVKEDLYTTIH
IEEFEVHARDTKLGPEEITRDIPQVREEALKNLDDSGIIRTGATVKHGDILVGKVTPKGE
TILSPEEKLLRAIFGEKASDVKDASLTVPPGIEGTVVDIKVFTRKGQEKDLRTQQIERDQ
IAKWEKDLSDEERIIRAEAKKKIVTLLKGKELSEALTDDKGQKELLPKGKKLTQNMLEAV
SYHRFRQVSVAAGKNRIETEVLDILDKTESQLKVLRDILNERMERLLKGDELMPGVLKTV
KCYVAVKRKLQVGDKMAGRHGNKGVVSRILPVEDMPYLPDGRPVDIVLNPLGVPSRMNIG
QVLECHLGWAGKTLGVHFSTPVFDGAREADIKGFLTQAWEKNHKLGPDVTGKTKLFDGMT
GEAFEQPVNVGCVYMLKLHHLVDNKIHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAHVLQELLTYKSDDMHGRTQIYQAIIKGETIKDPGLPESFNVVKKELNALCIDV
EMLTREELDPGLTEEEPVAFSIEG
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttcagcagaacatctaccgccagcgccacaacttctcgaagatccggtccctg
gttcccatccccaacctgatcgacatccagaagcgcagctacgacgagttcctccagatg
aacctgctccacagcgagcgggagacgcgcggcctcaaggccgtgttcgagtcgatgttc
cccgtgcagaacggcaagaatcccgacggcagcgacgccacgctggaagtcgagttcctc
gactacaccgtgggtcactgggcctgcaagtgcgaaaagtacctgggcctcgagcacctc
cgcacccagtgcaagcagtgcggccacaacatcgtgtcggaccacccgaaggatcccacg
gtggactgccccaagtgcggcacccgcaacaagaacgcagcgaccatctgtgatgtgtgc
caagagcccgtctcgatgaagcagaagatgggcatggacgagtgcgtcgagcgcggcgcc
accatggccgcccctctgaagatccgcgtgcgcctcaaccagttcgaccgcgacgacaag
ggcaaccggcgcttcaagcagagccaggattcggaagtctacttcggcgacctgccgatc
atgaccgaccgcggcaccttcatcatcaacggcaccgagcgcgtgatcgtgagccagctg
caccgcagccccggcgttttcttcagcatcgcgccggacaagagcctctacagcgcccag
atcatcccctatcgcggctcctggatcgagttcgagctcgattccaagggcctgctctac
gcccgcatcgaccgcaagcgcaagttcctgggcgccaccttcatgcgcgccctcggcctg
ttcagcgaagacctgaactccaatgagcccatgcttcggcacttctacacgccggcgacc
ttcttcctcaagaagggcaagctgagcgtggccctgagcgacctgctggcggggcgcaag
ctcggcgaggccgtgaagcaccccaagaccaaggaagagatcctcgccaaggacaagaag
atcacccgccgcgtcctcgagcagatggagaaggccggcatcaaggatgtgccggtcgag
cgcgagatgctcgacggcgccgtgctgctgcaggatgtggtgaacatgggcaccggcgaa
gtgctcatggaggccaacgagcccttcctccagacgcacctcgagatgttcctggccaat
gatgtgcagtccttcgatgtcttcttccccgaagcggacgccactggcaaggtcttctcc
gagaccctggccaaggaccacaccgaggacagcgaggaagccgccaaggagctcttcaag
aagatccgtcccggtgagccggccacgctggaatccagcaagaagctgctctacggcatg
ttcttcgacggccagaagtacgacctcagcaaggtgggtcgccacaagatcaacgcgaag
ctgggtctgaacaccgacctggaattccgcaccctgggcaccgacgatttcatccggacc
gtccactacctgctgcgcctcaagaaatacgacaccacccgccaggacatcggcgagatc
gcccccgtgcgcgcggacgacatcgaccacctgggcaaccgccgcgtgcggtccgtgggt
gagctcctcgagaacggcttccgcgtgggcctcgtgcgtgtgcagcgggccatcaaggag
aagttcagcatcgcgcaggaccccaacagccccctgcaggcccacgacctgatcaacagc
aagccggtcatcgcggcgatgaaggagttcttcggcagcagccagctctcccagttcatg
gatcagaccaacccgctgtccgagatcacccacaagcgccgcctctcggctcttggaccg
ggcggcctcagccgcgaccgcgccggcttcgaggtgcgcgatgtgcacacctcgcactac
ggccgcatctgccccatcgagaccccggaaggcccgaacatcggcctcatcagctcgctc
tcctgctatgcccgcatcaacgagttcggcttcatcgagagcccctacctcaaggtggag
aacggccgcatcgtccacttcgccaaggtcaccagcgtgggcgactccaagttcggctac
atggatgtggtccgcctcgaggatctggaagacgagaacaagaagctgaccaagggcggc
aagcgccccgcgaagtacgagatgcacgccttctacctctccgcctgggaggaggacgag
catgtcatcgcgcaggccaatgtgcccgtcgacaaggacggcgccatcacggaagaggat
gtgaccgtccgtgtcgccggcgagaccaagatcgtctcccgcgacaaggtcacgctcatg
gatgtgagtcccaagcaggtggtctccgtggccgcttcgctgattcccttccttgagaac
gacgacgccaaccgcgccctcatgggcgccaacatgcagcgccaggccgtgcccctcatc
cgcaccgaggcccccatcgtgggcaccggcatggagtatgtcgccgccaaggattccggc
gcctgcgtggtgtgccgccgctccggcatcgtcgagaccgtggatgccaaccgcatcgtg
gtgcgcgtcgaggacgatcccgagaccgagggcatcgaatccggggtggacatctacacc
ctggtgaagttcgcccgcagcaaccagaacacctgcctcaaccagacccccctcgtgaag
aagggcgaatatgtcaccgaggaccagatcctcgcagacggcccctgcaccgaccacggc
gaactggccctgggccgcaacctcgtcgtggcctacatgccctggcgcggctacaacttc
gaggacgcgatcctgatctccgagcgcgtggtgaaggaagacctctacaccaccatccac
atcgaggagttcgaggtccacgcccgcgacaccaagctgggccccgaagagatcacccgc
gacatcccccaggtccgcgaggaggccctcaagaacctcgatgacagcggcatcatccgc
accggcgccaccgtcaagcacggcgacatcctggtgggcaaggtcacgcccaagggcgag
accatcctcagccccgaggagaagctgctccgcgccatcttcggcgagaaggccagcgat
gtgaaggacgccagcctgaccgtgccccccggcatcgaaggcaccgtggtggacatcaag
gtcttcacccgcaagggccaggagaaggatctgcgcacccagcagatcgagcgcgaccag
atcgccaagtgggagaaggatctctccgacgaggagcgcatcatccgcgccgaggccaag
aagaagatcgtgaccctgctgaagggcaaggaactttctgaggccctcacggacgacaag
ggccagaaggaactgctgcccaagggcaagaagctcacccagaacatgctcgaggccgtg
tcctaccaccgcttccggcaggtgtccgtcgccgcgggcaagaaccgcatcgagaccgag
gtgctggacatcctcgacaagaccgagagccagctcaaggtcctgcgcgacatcctgaac
gagcgcatggagcgcctgctcaagggcgacgagctcatgcccggcgtcctcaagaccgtg
aagtgctatgtggccgtgaagcgcaagctgcaggtcggtgacaagatggccggccgccac
ggcaacaagggcgtggtcagccgcatcctccccgtggaggacatgccctatctgcccgac
ggccgccccgtggacatcgtgctgaaccccctcggcgtgccttcccgtatgaacatcggc
caggtgctcgagtgccacctcggctgggccggcaagaccctcggcgtccacttctccacg
cccgtcttcgacggcgcgcgcgaagccgacatcaagggcttcctcacccaggcctgggag
aagaaccacaagctgggccccgatgtcaccggcaagaccaagctcttcgacggcatgacc
ggcgaggccttcgagcagcccgtgaatgtgggctgcgtctacatgctcaagctgcaccac
ctcgtggacaacaaaatccacgcccggagcattggaccctacagcctcatcacccagcag
cccctcggtggcaaggcccagttcggcggccagcgcttcggcgagatggaagtctgggcg
ctcgaggcctacggcgcggcgcatgtgctgcaggaactcctcacttacaagtccgacgac
atgcacggccgcacccagatctaccaggccatcatcaagggcgagaccatcaaggatccc
ggcctccccgagagcttcaacgtcgtgaagaaggaactcaacgcgctctgcatcgatgtc
gagatgctcacccgcgaagagctggatccaggcctgacggaagaagagcccgtcgccttc
tccatcgaaggctga
DBGET
integrated database retrieval system
