Geothrix oryzae: GETHOR_28420
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Entry
GETHOR_28420 CDS
T09137
Name
(GenBank) hypothetical protein
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
gex
Geothrix oryzae
Brite
KEGG Orthology (KO) [BR:
gex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gex03016
]
GETHOR_28420
Enzymes [BR:
gex01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
GETHOR_28420
Transfer RNA biogenesis [BR:
gex03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
GETHOR_28420
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
BTAD
DUF802
Motif
Other DBs
NCBI-ProteinID:
BDU70741
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All DBs
Position
3175293..3175841
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AA seq
182 aa
AA seq
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MEVGRRRLFFALPLPPQLREALGRWQGRLSEDAGEGARWCRPEGLHLTLAFLGDCPEEAL
PRLGAVGEAVAGRRDAFALHTAGLGGFPSLGAARVLWLGLEPSPALEALAADLRTTLGAA
GEPFEARPFRAHLTLARFRRIRSLAGFPAPPPAAFAADRLALFESRPQGCYTPLQVWSLR
TV
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
gtggaagtaggccggcggcgcctcttcttcgccctgcccttgccaccccagctgcgggag
gctctcggccgctggcagggccggttgtcggaggacgcgggggagggtgcgcgctggtgc
agacccgaggggctccacctcaccctggccttcctcggtgactgtcccgaggaggccctg
ccccgcctcggcgcggtgggcgaagccgtggccggacgccgggacgccttcgccctccac
acggcggggctcggcggctttccgagcctcggcgcggcgcgggtgctctggctgggcctg
gagccctcccccgcactggaggccctggccgcggacctgcgcacgaccctgggcgccgcc
ggggaacccttcgaggcccgaccgttccgggcccacctcaccctggcgaggttccgccga
atccgatccctcgccgggttcccggcgccgccccctgcggcctttgcggcggaccggctt
gcgctcttcgagagccggccccagggatgttacacgccgctgcaggtctggtccttgcgg
acggtatga
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