Glutamicibacter ectropisis: QMQ05_03885
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Entry
QMQ05_03885 CDS
T10591
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gey Glutamicibacter ectropisis
Pathway
gey03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QMQ05_03885 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gey03400
]
QMQ05_03885 (mfd)
Enzymes [BR:
gey01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QMQ05_03885 (mfd)
DNA repair and recombination proteins [BR:
gey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QMQ05_03885 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
XAO46681
UniProt:
A0AAU6WHG3
LinkDB
All DBs
Position
843713..847324
Genome browser
AA seq
1203 aa
AA seq
DB search
MSLNGLHDFLREESSFRRIRQSAANSFSTRSEELEIAAPQGMRAILSAHISQALKESTND
SVTLIVTATGREAEEVSSSLGAYLPAEQIAEFPSWETLPHERLSPRSDTVGRRLEVLRRL
HNRDENLNVIIAPIRAVLQPLVAGLGELRPVTLELDAEPGFDQVIKDLAAAAYARVDMVT
HRGEFAVRGGIIDVFPPTLDHPVRIDFFGDQIDSMRYFAIADQRSTDDAGPQKIIATPCR
EMLITPQVMSRAANLKNHFPAAEEMLTKIAGGIAVEGMESLAPLLVDKMVPLLSLLPESS
IALIMEPERVRARAQDLNATNAEFLAAAWASASDGASAPLDLNTATSERKLATGDFASLA
ETLEHAKEAKVSWWALTAMGADEELDLGASTIRIPAREPHGYQGDIEAMMEFIAGRVKDQ
WRFVVATEGPGPAQRLSELFAEFSIPAHRVENIDHEPTAGLIEITQATAGRGFVFEDLKF
GLLTEADLLGRSSAYPNRKGRKLTVKRKRNAVDPLSLQAGDFIVHEQHGIGKFVELMARK
VNGSGKDAKREYLVVEYASSKRGAPGDRLFVPMDQLHMVTRYVGGEAPTLSKMGGSDWAS
TKSKARKAVKEIAGDLIKLYSARMASRGHAFGQDTPWQNELEEAFAFIETPDQLTAINEV
KSDMEKEIPMDRLISGDVGFGKTEIAVRAAFKAVQDSKQVAVLVPTTLLASQHYQTFTER
YSGFPVRVKTLSRFQTAKESKEILAGLKDGSVDIVIGTHRLLSKNVEFKNLGLVIIDEEQ
RFGVEHKEELKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPVLTYVGP
RSDKQISAAIKRELMRDGQVFFVHNRVSSIERVAAELRELVPEARVEVAHGKMSESRLER
IIQDFWEKKFDVLVSTTIIETGLDISNANTLIVDRANNYGLSQLHQLRGRVGRGRERAYA
YFLWDVEKPLGEVALERLKAVAAHNELGSGYQLAMKDLELRGAGNLLGGEQSGHIAGVGF
DLYLRLVGEAVADYKGEGEEEATEMKIDLPVNAHLPHDYVPGERLRLEAYRNIASAETNE
ALAEVREELVDRYGKLPQPVENLLRVAALRIRARAVGLHDIQQIGNNIKLSPAKIEDLPA
SRQVRLERLYPGAANKPALNSIFLPKPKTSPIGGRDLADEEILEWAEKLLYAIFEPTPAP
AAQ
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaacggacttcatgacttcctgcgcgaggagtcatccttccgccgaatccgt
caaagtgcagccaacagcttctccacacgaagcgaagagctggagatcgcggcaccacaa
ggaatgcgcgcgatcctctcggcgcatatcagccaagcgctcaaggaaagcaccaacgat
tcggtgacgctcattgtcaccgcgaccggacgcgaagccgaggaagtctccagctcactg
ggcgcctatcttcctgcagaacagattgcagaattcccttcttgggaaaccctgccacac
gagcgcctctcaccacgcagtgacaccgtagggcgccgcctggaagtcttgcgtaggctt
cacaaccgcgacgaaaacctcaacgtcatcattgcccctattcgtgctgtacttcagccc
ctcgtcgccggcctgggtgaactccgtccagtgaccttagaactagatgcagagcctggc
ttcgaccaagtcatcaaggatcttgccgcggcagcgtacgcccgcgtcgacatggtgacg
caccgcggagaattcgcggtgcgtggcggaattattgacgtgttcccaccaactcttgat
cacccggtgcgtatcgatttctttggcgaccagattgattccatgcggtacttcgccatc
gcagaccagcgttccaccgatgatgctgggccacaaaagatcatcgccactccttgccgt
gaaatgctgatcaccccgcaggtcatgagccgggctgcaaacctgaagaaccatttcccg
gccgccgaagaaatgctcaccaaaattgctggtggtatcgcggtagaaggcatggaatcg
ctggcaccattgctggtcgacaagatggttccgttgctctcgctgttgccagagtcatcc
attgccctgatcatggagcctgagcgggtgcgtgcccgggcccaagacctcaatgcaacc
aacgcagaattcttggcagcagcctgggcctcagcctcagacggagccagcgcaccactg
gatttgaacaccgccacctccgaacgcaaactcgccactggcgacttcgcctcactggcc
gaaaccctagagcacgctaaagaagccaaggtctcctggtgggcgctcaccgccatgggc
gcggatgaagagctagatctaggtgcctcaaccatccgtatcccggctagagaacctcac
ggatatcaaggcgatattgaagcgatgatggaattcatcgccggacgagttaaagatcaa
tggcgatttgttgtggccaccgaggggcctggtccggcccagcgactctcggagttgttc
gcagaatttagcatccctgcacaccgtgtagagaatattgatcatgagcctactgcgggt
ctgattgaaatcactcaggccaccgccggacgtggcttcgtctttgaagatctcaaattc
gggttgctcaccgaagctgatctactgggacgctccagcgcctacccaaaccgcaagggc
cgcaagctcacggtcaagcgcaagcgtaatgccgtggaccccttgagccttcaagcaggg
gacttcatcgttcatgagcagcatggcatcggtaagttcgtggaactaatggcgcgcaag
gtcaatgggtccggcaaggatgccaagcgcgaataccttgtcgtggagtacgcgtcctca
aaacgcggggcaccgggggaccggctcttcgtgcccatggatcagctgcacatggtcacc
cgatacgttggtggcgaagctccgactctctccaagatgggcggctcggattgggccagc
accaaatccaaggcccgcaaagcggtcaaggaaattgctggggatttgatcaagctgtac
tcggcccgcatggcgagccgaggacatgccttcggtcaggacaccccatggcagaacgaa
cttgaagaagcatttgcgttcattgaaactccggatcagctcaccgctatcaatgaggtg
aagtccgatatggagaaggaaattccgatggaccggctgatttccggtgacgtcggcttc
ggcaagactgaaatcgcggtgcgtgccgcgttcaaagccgtccaagactccaagcaggtc
gccgtcctggtgcccaccacgctgctggcctcccagcactatcagaccttcaccgaacgt
tattcaggcttcccggtgcgagtgaagactctttcgcgtttccaaactgccaaggaatca
aaggaaatcctggcggggctgaaagacggcagcgtcgacattgtcatcggtacccaccga
ctgctctcaaaaaacgttgagttcaaaaacttgggtctagtcatcattgacgaggaacag
cgcttcggtgtggagcataaggaagagctcaagaagatgcgcaccaacgtggacgtgctg
gccatgagtgctaccccgattccgcgtaccttggagatgtctctgactggcatccgtgaa
acctcaaccctggccacgccaccggaagagcgtcacccggtgctgacctacgttggcccg
cgcagtgataagcagatttccgcagcgatcaaacgagaactaatgcgcgatgggcaggtg
ttcttcgtgcacaaccgcgtcagctcaattgaacgtgtggctgctgaattgcgtgaactc
gttccggaagctcgcgtggaagtggcgcacggcaagatgagtgagtcacggctggaaaga
atcatccaagacttctgggaaaagaagttcgatgttctggtctccaccaccattattgaa
actggcctggatatctccaacgccaatacgctgattgtggaccgcgccaataactatggt
ctctcccagctacatcagttgcgcggtcgagtagggcgtggacgtgaacgcgcctacgcc
tacttcctctgggacgttgaaaagcctttgggcgaagtcgccttggagcgcttgaaagct
gtggcagcgcacaatgaactcggatccggataccagttggcgatgaaggacttggaactg
cgaggggccggtaacctactgggcggcgaacagtccggtcacatcgcaggcgtgggtttt
gatttgtacctgcgactggtgggtgaagccgtagccgactacaagggtgaaggcgaagag
gaagccactgagatgaaaattgacctgccggttaatgctcatcttccgcatgactatgtt
cccggcgagcgactgcgtctggaggcctaccgtaacattgcttcggcagaaaccaatgag
gcgctcgccgaggtgcgagaagaactggtggaccgttatggcaagctgccacagccagta
gagaacctcttacgggtggcagcactacgcattcgtgcccgcgccgtgggactgcacgac
atccagcagattggtaacaacatcaagctctcgccagcgaagattgaagaccttccggca
tcacgtcaggtacgtctggaacgtctctatccgggagcagcgaacaagccggcgttgaat
tcgatcttcctgcctaagccaaagacctcgccaattggtggacgagacttggcggatgaa
gagattcttgagtgggccgagaagttgctctacgccatcttcgaacccacacctgccccg
gccgcgcagtaa
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