Georgenia wutianyii: FE251_02235
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Entry
FE251_02235 CDS
T06026
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gez
Georgenia wutianyii
Pathway
gez03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FE251_02235 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gez03400
]
FE251_02235 (mfd)
Enzymes [BR:
gez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FE251_02235 (mfd)
DNA repair and recombination proteins [BR:
gez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FE251_02235 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
ResIII
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QDB78324
LinkDB
All DBs
Position
479337..482912
Genome browser
AA seq
1191 aa
AA seq
DB search
MRLTGLIPPLLADPAFARSVAAAAHGGERTVSIPLGLRAALVAAITGGETSADRPVVIVT
ATGREADDAAAALRNFLPDDDVAVLPAWETLPHERLSPRSDTVARRIAVFRRLAHPGVGR
TGPIRVLVVPVRALLQPVIKGLGDLEPVELSVGDERPLEDVAAALTAAAYSRVDMVESRG
QFAVRGGILDVFPPAEDHPLRLEFWGDTVEEIRWFSVADQRSLDVADHNLWAPPAREMLL
TGAVRARAKALVGDMPGAADMLERLGEGIAVEGMESLAPLLVDGMEPVLTLVPDDTLVVM
SEPERVRRRAHDLVATTEEFLAAAWASAAAGGQTPLQLREASFATLEDTHELALARGLGW
WDLTTLSAELPPVEEGEESSETVAARDVEPYRGDVPRALADLRSLTREGWRLLITTQGPG
QARRMVEQLADADVPARQVEDVLEEPPGGVVLVTTAAVPRGFVATDLRLAVVTESDITGR
AGTSTRDMRKMPSRRRGVVDPLALRPGDYVVHEQHGVGRFIELVQRTVGRGKDATTREYL
VIEYASSKRGQPGDRLFVPTESLDQVTKYSGGEAPTVSKMGGADWARTKSRARKAVREIA
AELIRLYAARASTKGHAFGPDTPWQRELEDAFPYVETPDQLVTIEEVKADMEREMPMDRL
LSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFDTFSERYAGFPVEVRALSR
FQSDAEAAAIREGLSNGKVDVVIGTHRLLTGEVRFKDLGLVVIDEEQRFGVEHKETLKQL
RTDVDVLAMSATPIPRTLEMAITGIREMSTLATPPEERHPILTYVGPYEEKQVAAAVRRE
MLREGQVFFVHNRVSSIQRAAQRIAELVPEARVAVAHGQMGEHQLERVIQDFWNKEFDVL
VCTTIVETGLDISNANTLIVDRADTFGLSQLHQLRGRVGRGRERAYAYFLYPPEKPLTET
AHDRLATIASHTELGAGIQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVADAVAE
FRGEKEQEKAEVKIELPVDAHIPHEYIEHERLRLEAYAKISAADDDADIDAIRAELTDRY
GPVPEQVERLFAVAALRTRARAVGLTDITAQGRYVRFAPVELPESAQLRLKRLYPGTVLK
PAIRTILVPFPTTAKVGGKPLHDAALLVWAGELIDAVLSGSVAAAAQVATS
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgcgactcaccggactcatccccccgctgctcgccgacccggccttcgcccgctcggtc
gcggccgccgcgcacggcggcgagcggacggtcagcatcccgctcggcctgcgcgccgcg
ctggtggccgccatcacgggcggggagacgtcggcggaccgtcccgtcgtcatcgtcacc
gcgaccggccgcgaggccgacgacgccgccgccgcgctgcgcaacttcctccccgacgac
gacgtcgcggtgctgcccgcctgggagaccctcccgcacgagcggctctccccgcgcagc
gacaccgtggcccgccggatcgccgtgttccggcgtctggcccatcccggcgtcggccgc
accgggccgatccgcgtcctcgtcgtgccggtccgcgcgctcctccagccggtgatcaag
ggactcggcgacctcgagccggtcgagctgtccgtcggcgacgagcggcccctcgaggac
gtcgccgccgccctcaccgcagccgcctactcacgggtcgacatggtcgagtcgcgcggc
cagttcgccgtccgcggcggcatcctcgacgtattcccgcccgccgaggaccacccgctg
cgcctggagttctggggcgacacggtcgaggagatccgctggttctccgtcgcggaccag
cgcagcctcgacgtcgctgaccacaacctctgggcgccgccggcccgcgagatgctgctg
accggcgccgtgcgggcgcgggccaaggcgctcgtcggggacatgcccggcgcggccgac
atgctcgagcggctcggtgagggcatcgccgtcgagggcatggagtccctggcgccgctg
ctcgtcgacggcatggagccggtcctcaccctcgtccccgacgacaccctcgtcgtcatg
tccgagccggagcgcgtccggcggcgcgcccacgacctcgtggccacgaccgaggagttc
ctcgccgcggcctgggcgtcggcggcggcgggcggccagacgccgctgcagctgcgcgag
gcgtccttcgccaccctcgaggacacccacgagctcgccctcgcccgcgggctcggctgg
tgggacctcaccacgctgtcggccgagctgccgcccgtggaggagggggaggagagcagc
gagaccgtcgccgcgcgcgacgtcgagccctaccggggcgacgtgccgcgcgccctcgcc
gacctgcgctccctcacccgcgagggctggcgcctgctcatcaccacccagggcccgggc
caggcgcgccgcatggtcgagcagctcgccgacgcggacgtgccggcccggcaggtggag
gacgtcctcgaggagccgccgggcggcgtcgtcctcgtgacgacggcggcggtcccgcgt
ggcttcgtcgccaccgacctgcgcctcgccgtcgtcaccgagtccgacatcaccggccgc
gccggcacctccacgcgcgacatgcgcaagatgccctcgcggcgccgcggcgtcgtcgac
ccgctcgcgctgcggccgggggactacgtcgtccacgagcagcacggcgtgggccggttc
atcgagctcgtccagcggaccgtcgggcgcggcaaggacgcgacgacgcgcgagtacctc
gtcatcgagtacgcctcctccaagcgggggcagccgggggaccgcctcttcgtgcccacc
gagtccctggaccaggtgacgaagtactccggtggcgaggcgccgaccgtgagcaagatg
ggcggcgcggactgggccaggacgaagagccgggcgcgcaaggcggtccgcgagatcgcc
gccgagctcatccgcctgtacgcggcgcgcgcctcgaccaagggtcacgccttcggcccg
gacaccccgtggcagcgtgagctcgaggacgccttcccctacgtcgagacccccgaccag
ctcgtcaccatcgaggaggtcaaggcggacatggagcgcgagatgcccatggaccgcctg
ctgtccggcgacgtcgggtacggcaagaccgagatcgccgtccgggcagccttcaaagcg
gtccaggacggcaagcaggtggccgtcctcgtgccgacgacgctgctcgtccagcagcac
ttcgacaccttctccgagcgctacgccggcttcccggtcgaggtccgcgccctgtcgcgc
ttccagagcgacgccgaggccgccgccatccgcgagggtctgagcaacggcaaggtcgac
gtcgtcatcggcacccaccgcctgctcaccggcgaggtccggttcaaggacctcggcctc
gtcgtcatcgacgaggagcagcgcttcggcgtcgagcacaaggagacgctcaagcagctg
cgcaccgacgtcgacgtcctcgcgatgagcgcgacgccgatcccgcgcaccctggagatg
gcgatcaccggcatccgcgagatgtcgacgctcgcgacgccgccggaggagcgccacccg
atcctcacctacgtgggcccctacgaggagaagcaggtggccgcggccgtgcggcgcgag
atgctccgcgagggccaggtgttcttcgtccacaaccgggtgtcctcgatccagcgggcc
gcgcagcgcatcgccgagctcgtccccgaggcgcgggtggccgtggcgcacgggcagatg
ggggagcaccagctcgagagggtcatccaggacttctggaacaaggagttcgacgtcctc
gtgtgcacgacgatcgtcgagacgggcctggacatctccaacgccaacaccctcatcgtc
gaccgcgccgacaccttcggcctgtcccagctccaccagctgcgcgggcgggtcgggcgc
gggcgcgagcgcgcctacgcctacttcctctacccgccggagaagccgctcaccgagacg
gcgcacgaccggctcgcgaccatcgcctcgcacaccgagctgggcgccggcatccaggtg
gcgatgaaggacctcgagatccgcggcgcgggcaacctcctcggcggggagcagtccggc
cacatcgccggggtcgggttcgacctgtacgtgcgcatggtggccgacgccgtcgcggag
ttccgcggggagaaggagcaggagaaggcggaggtgaagatcgaactcccggtcgacgcg
cacatcccgcacgagtacatcgagcacgagcggctgcgcctggaggcctacgcgaagatc
tccgccgcggacgacgacgccgacatcgacgcgatccgcgccgagctcaccgaccgctac
gggccggtgcccgagcaggtggagcggctcttcgcggtggcggcgctgcgcacccgggcg
cgtgcggtcgggctcaccgacatcaccgcccagggcaggtacgtgcgcttcgctccggtc
gagctgcccgagtccgcgcagctgcgcctcaagcgcctctacccgggcacggtcctcaag
ccggcgatccgcacgatcctcgtcccgttcccgacgacggcgaaggtgggcggcaagccg
ctgcacgacgcggcgctgctggtgtgggccggcgagctcatcgacgccgtgctcagcggg
tcggtcgcggcggccgcgcaggtcgccaccagctga
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